Chr:
Chr6
Start:
26462707
End:
26494085
Strand:
-
Ref_name:
OSA-LNCN6087
Sequence
(OSA-LNCN6087.1):
CGUCAUUCUCCUCCUCUAUGGAAUUCUCGUGCCGUACACGGGUAAAUUUAGAUUUACCCCCAACCCUCUAUGACAGGUAAAAAUACUACUACCUCCAUCUCAAAACAAGUACAGCCGUGGAUAUCCGUACCCAACGUUUGACCAUUCGUCUUAUUUAAAAAAUUUAUGAAAAAUUUAAAAAUAUUUAGUCACAUAUAAAGUAUUAUUCAUGUUUUAUCAUCUAAUAACAAUAAAAAUACUAAUCAUAAAAAAAUUUCAAAUAAAACGAACGGUCAAACGUUAAACAUAAAUAGUGCAAAACUGCACUUAUUUUGAGACGGAGGGAGUAGUACUUAAAGCAUCUCCAACAAUCUCUCCAAAUUAGAUUCUCCAAACACCCAUAUAGCCAGUCAAAACUCGUUACCCACUUCAACCGCCUCUCCAUCUACGCUAUCCAUUUUAAGUGUAUGACAGUAGGUCCCAUGUGUCAGCCUCCCUACUAUUCUUAUUCACCCCUCCUCUCUAAUUUUUCUUUUCUCCUCCCCCCUCUUUCUCUCUCUCUCUCCACCCACUCCACACCACCAGAGACAACGUGGAGGCAACGACGGGCGCCGUGGAUUCGAGGAGACGGCGUAGACGAUGGCGGUGGCGGCGGCUCGCGACGACGACCUCGGCAACGGGGACCUCGACGACGACCCGGGGUGCGGAGGCCGUGCGGCCCCGAAUCCACGCCGCCGGCCAAAUCCGUGCGGGGCGGAGUCGCACAGCGGGGCGGAAUCCAGCAGGCACAGCGAUGAGGCGAGGUCGGGUGGUGGACGGAGUGGCUGCACUCGGCGAGGAGUGCACCAGCCGCCACGCCCACCAAGUAGUCCAGUGCAGAAAACUGGGCACAAACUAACUGCAUAUAUCAAAAUCAAAUCAGAAAGCUGUGAGCGAACGCGGCGACUGCACGUACGGCACCACUUGCUUGUUUGUUCCCCAAGAGGUCACUGGCGGAAGCCCGCAAAGUAUUAGCCGGAUUCGGGUGGCGGCGCGGAUUCAGGCAGAUGGCGGCGUGGGCCCUCUUGCUCGCGUCGGCAAGGGCGACGGCGACGCUGGACCGACGGACAAUGGCGGUGGUCCUGCAUGCUUCUCCGGCUUGCACUACAAGGCGCCACUGCCUCGACCAUCGGCGGGAGGCCACCGAUGCGGCGCCGUUGCCACGCCCUCGGUCACCGAUGAGGUUGCACCAUCGGCUCUCCUUCUUGGCCACAUUGCUCCCCAACAGAGGAAAAGGGUAUGGAAGGUGGUGGGACCCACAGAUGGCAAGUGGAGUAGGCUGGCUAAGUUUGGCUAGUGAGGAAAGUAAUUUGGCCAUCCGGAUAGUUGGAGAGUGGGAUGGAGAGACUGUUGGAGUGCGAUUUUCGUUCAAAAUGCCUAAAUUUUGGUUUAGAGAAUGGGAUGUAAAAGUUGUUGGAGAUGCUCUUACCUACCUGCUCUACUUUUCUUUCGUGGUAAUUUCGCUUGAAUCGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
39.02%
HE_num:
HEP:
60.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
205.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.2827465812961 | 3.52040612509628e-79 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.13727186203822 | 5.12239498490663e-68 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.22466016040194 | 2.32234412518219e-280 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.33936943344405 | 3.86540748710833e-267 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.39413184204996 | 8.455074417514e-283 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.359367259252 | 0 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.34146932142849 | 1.93770117745464e-75 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.01926050979338 | 5.56582848747555e-14 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.78688825813405 | 5.27165689251601e-62 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.39002472805138 | 0 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.61832017360906 | 2.72502500333074e-118 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.80739925298543 | 3.8519095176476e-128 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.31838059635288 | 4.35782032011335e-09 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.61210655217655 | 3.79005051285728e-254 |