Chr:
Chr6
Start:
26385949
End:
26387296
Strand:
+
Ref_name:
OSA-LNCN6085
Sequence
(OSA-LNCN6085.1):
GUGCUGGGUCAAACCGAGAAGGAUUUGGUGGAUCCGAUGCGAUGGGGAAGGCGAGGAGGCGAGUUGAGUGGAGGUAGCCGUUUGCCUCGCCGUCUUGCCCGUUGCAGAUGCCAAUAUGCCAUUGCCACCACACGGUCUGGUCCACACUUGCACUGUCCAGUCUACGAGUGCCACCCCUUUUGUAACGUGACUGUUGUGCGUGGAUCAAGCUAGCGGACGCUUUUGGACGGUCAAAUGCGCAGUACUCGCCACUCGAAUUGGCGCGUGCACGUGUGCGCGAGCUGCUGCUGCUACAUUGGACUAAGAACAAGUCCUAACUAUAGAAGUACCCGAAGUACCCGGUGCGGUCCGUGUGCAAUUUGAUCCCAUCUAACUCGUCACAAGGUGUUUGCUUUGCUUCUUCAGCUCCACCGAUCAAUAAAAGAUUGCAUUCUGCAUUUUGUCACGAGUAUGACCAAUGGAUUUGUGGGUAUGUAGACACUAGUUAUAUUUGAAAAGCUUCUGAUAUACUCCCUUCAUUUCAUAAUGUAAGAUUUUCUAGCAUUGUCCAUAUUCAUAUAGAUAUUAAUGAAUCUAAACACUAUAUAUAUCUAGAUUCAUUAAUAUCUAUAUUAAUAUAAGCAAUGCUUCAAAGUUUUACAUUGUGAAAUGGAGGAAGUAAUAUAUAACUCCAGCUAUCGGAAGCUUUCAAGUGACAAAACAUGAUCUAACUAACAUUGUUCAUGUUCUGGAACAAAACAGGAAAGAAAAAACAGGCCGCCAGGGCAGCCAAAAAUAACUUUUUUUUAGAUAAUAGCCAAAAAUAACUAGCACUACUACUUACAACUACUAGGAGAAAGAGGCAAUAGUGAUAGUUAAUGUAGUAAUGUAGUAGAAAAAUUUUCUUUAAGAAAAUAUAUGUUUCGAAGCAUGAAACAUAUAAUAUAUGUCAAUAAUUCGAUUUUUAAGAUGAAGAAAGAAAGUCCUAAAGCGCAAUGCGUACUGUAACUUUUGAUGUCGUAUAGCCUUACGGGCCUAGCAGCGUCGCAAAGGAAAAAAGUCCAAUUGACUCCCUUAAAUAUCGAGCGAAUCUAAUUUGUACCCUUAACCAGAAAACCAGAUAAGAUGAUUCCUUAAACUAUUAAAACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.66%
ME_num:
MEP:
43.9%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
2.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.26507785048232 | 0.000475606213668456 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.55138486865761 | 0.0292869769826511 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.52759004348421 | 0.00972820562649438 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.33898864542453 | 1.02545029897009e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.39291462309955 | 0.0250280662566376 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.48421732095323 | 2.08584471792832e-05 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.9535670064148 | 0.0353116187601311 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.84735298718067 | 0.00452202015673399 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.81467232684595 | 0.0247249474843082 |