RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6066

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

25639653

End:

25640261

Strand:

+

Ref_name:

OSA-LNCN6066

Sequence
(OSA-LNCN6066.1):

GGAUAUAUAAACUUUUGACUUAUAAACUUUGGGUCUCUAAACUUUAGAUGUGUAAACUUGAGGUGUACAAAAACUUUAGGUGCAUAAAUUUACUAAAAUAGGAAAGUAAUGCAAUGCCAAAAAAAGGAAAACACGUGGAGGAGGGUGAGUGUCGAUCGCCGCGAUCACCUGUUAGCCUUUUCGUCCCGCGAGUCUAUGCGUGGCGGAGAAAACGCAUCCCGCCUACGCUGUGGAGUGCGUGGCUCCAAGUCGCCAUCCCCUCACGCCGCACAGGGGACGGAAUCCCCAAAGUAGAUCGGGCAAAAACUAAAUACACUUCAUAUUUUGAGACAGAGGGAAUAUGUGAUUAUCCUAUUGAUCAAAUUGAAUAGCUCUCUUUAAAACAUUAACCUUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

473

LEP:

96.14%

ME_num:

14

MEP:

2.85%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.99

Avg Expression:

1.80

Tip: OSA-LNCN6066 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-4.325219163139310.0491337332126949
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-4.684066159305290.0236247823331224
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.388999094127490.032485867144946
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-4.044827574286980.0315226654588076