Chr:
Chr6
Start:
24727030
End:
24735640
Strand:
+
Ref_name:
OSA-LNCN6040
Sequence
(OSA-LNCN6040.1):
CCCGAGUUGGUGUCUCACAUAUGGUGUGAGUUAAUGGCAUUGUGGCACCACUCUAUUACAUUGCCUAUAAAUAGCAAGAAUCAUACAUUCAUGUCAAGGAAGGAAGAAAGAUACCUCAUACUAUUGUAUAUUGUAGGAGAUGGAGUGAUGGGAAGAUCGAGUGAUUGUCGAAAUAAUUAUCAUCCAAAUAGUAAAGUUAUGUAGGAAAGAGGGGCACUAGGAAUUCAACUUAUAGCUAAGGUUAAUUGUUUCCAGAAUUUAGUAUGACACCUUGGUAUAGAACAGGCAGGAGAACCAGAUGAAAGCAAAUUUUAAGUAUAGUUUUUAAACAUAAGAUCUCACUGAUCGAGGAGGAUGGUGCCAGUGCGACACAUAUUCCUUCAUAGCAGUCCAAGAAAAAUGGUAUUGAAGUGCGGUGAGUUCGGAAGCUAUGGGCCUAUAGAACAAUCAUUUUUCAUGGUUCUUACCAUACUUAAACUAUCUCCUGCAGCACUAUAAAAUUCAUAAUUACCAAAGCAAAUACAGGCUCAGUACUACCUUCGUUUCAUUUCAUAUUAUUAGUCGUUUUGAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.5%
ME_num:
MEP:
6.1%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.25724305765445 | 0.0484411749577174 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.21923094740496 | 0.0447773892483253 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.83351544840862 | 0.0162868755934242 |