RiceNCexp:Browse

OSA-LNCN6025

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr6

Start:

24462607

End:

24464594

Strand:

Ref_name:

OSA-LNCN6025

Sequence
(OSA-LNCN6025.1):

UGGCGCUAUAUAUUUUAAUUUUAAUUUUGGAAAAAGUACGAAUUACCCCACCGAAGUAUUGCGGUAGUACGAUUUACCCCCUAAAACUACAAUACCGGACAUUUAACAGCCCAAACUCUUAAAACCGGAUAAAUUACCACCAUAGCUCGAUUAUAAGCGGUUUUCAGCCUACGUGGCACACACGUGGCGAUACAGUCAGAAAAACAAAUAAAAGCUGGUGGGGUCCACCUGCGCUUUUCUUCUCUCUCCUUGGCCUCUCUCUCUCUUGGUGAACAUAGGAGGCGACUGGCAGGUGCGGAGGCAGCCGCGGCUCCAAGGCCGGCGGCGGGCAGGCGCGGAGGCGGCGGGCCAGGAGCCGAGGCCGGCGACUAGCGGGCGUGGAGGCGGCGGGUGAGGAACCGACGAAGGUAGUCGGUGAUGGCUGGUGGCGGGCGAGGAGCCGAGGCCGGCGGCUGGCGGGCGCGGAGGCAGCUGCAGGCGGCGGGUGAGAAACCGAUGACGGCAGUCGGUGGGGGCGAAGGCGGGUGCGGGCGGCGAGCAAGGAGCCGAGGACGGCAGCGGGGAUAGCUGCGAGCGGCGGGCGGGCACGGAGGCGUCUUCGGGCGGCGGGCGGGCGAGGAGCGGACGCCGACGGGCGGCCGGCGGCGGGCGAGGCAAGCAGCUCUUCCUCUCUCUCUCUCACUCUCUCUGGUACCGUCGAGAGAGUGGACUCGAGGCCGGCGGCGGCGAGGCCGCGUCAGCGUCCGUGGUCGCGCCGCUGUGAUGCGCCUGCCAAUCCCGGACGCUAGUGACGAGCACGUCGUACUCCGUCGACGACGACGACGAGAAGCUCUGCCCGGGGGAGUGGUGCUUGUUGCGGUUGUACCUCUUCUUGACACUGGCGGCGGUGCCCACGGCGAGUGUGAGCUCCAGCUCCGCCGCCGCCGCCUCCUCGUCAUCGUUGGUCUCCUCGGCGUCCUCCUCCUCGGGGCUCUGCGUGUACUCGACCGCCAGCUCGACCGCCAGCACGGGCCACGAGCCACGGGCCGACCGUGAGCCACGGGCCGCCGUUCCUUCGGCGACGCCGCUUCGCCUCGCGCCUCCGCCCCGUCCGCCCCCGUGCACCACUGCCCACCGCCCCCGGGCACCGCCGCCCUCCGCCCAUCCGCCGCCGUGCCCGCCGCUGCCGCUCGCGGUGCCGCCCACAUCCUCCCCUGCACCACCCAGUGACCGUGAGAGAGAGAGAGAGUGAAGAGAGAGAGGAAGAGGGGAAGGGCAUGUAGGUCCCACAUUUUUUAAAAAAUAGAAAAUGCUGACUGGGUUGCCACGUGUACGUCACGUAGGACAAAACCGCUCUGAAUUGGAUCGAGGGGGGUAAUUCGUCUGGUAUUAAAAGUUCAGGGUGAACAAUAUCUGCUUUUCGAGUUCAGAGGUGUAAUUCGGUCGACCGCGAUAGUUUAAGGGGGUAAUUCGUAAUUUUUCCUUUAAUUUUAGUCCUAUGAAGUUUCUACUACACAUAGAAUCGGAUGUAGUAUAAUAGAAUCAGAUUCACUAGAUUUAAAGAAAUGAAUGGCUCACAAACAUUUUAAGGGUACCUUAAAAACCUACCAUUACUACAUACUAGUACUUUAUGCAUUUAAAAAAUAUUCUUUUCUUAAAAAAAUUAAAUACUACUCCAAUCCCUCUAUCCCUAUUUGACAAUCAAAUCUGCAAAAGAUGCUGAGACCAAGACAACAAAAACCCCUUUGUUCCCACAGUAAACCUCAUAUAUAGAUCAAGAGAUGUGAUGCUGUUUAAGUGUUGCGUGCAUGCAAAGGUGAAGGUGAAGGUGAAGGAGUAAAAUGCAAAACGCGCGCGGAUGCAUAUAUACGCGUACACAAAUAAACGAGGAGACAGGCAGCGAUGCCAUUUGCUCGUGCAUAAAUGAACAAAUAGAUGUCAAUCAGACAUUGAUCAACGGGGAGGGAUAGAGAAAGCAUUAUAUAGUAAGGCUGUGUUUAGAUCUAAAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

389

LEP:

79.07%

ME_num:

102

MEP:

20.73%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

caryopsis

Tau :

0.92

Avg Expression:

3.01

Tip: OSA-LNCN6025 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	3.60820601404206	0.00441977196127
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	4.53193916560964	0.000382329490297926
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	4.54832488957318	0.000166139098265029
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	4.14690826986925	0.0010234307456637
5	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h	2.38097057450197	2.48422381547636e-07
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	3.21106402962317	0.014690193737304
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	2.82190394008569	0.0359916077921073