Chr:
Chr6
Start:
24409134
End:
24409801
Strand:
+
Ref_name:
OSA-LNCN6023
Sequence
(OSA-LNCN6023.1):
GCGGCGGCGGCAGUUCGGCGAGGAGGACGCGCGGCGGGGCGGCGAGGACGCGCAGCGAGCAGGACGUGCGGCGGGGAGGCAGACGCGGCGGCGAGGAGGACGCGCGGCGGGGCGGCAAGGAGGACCGGCGGCGGCGGCUCGUCAGCUCGGCGAGGAGGACACGCGCGCCGCUUUGCCGGGAUGUUGCUACCUUGCCAGGAGGAGAAGGGGCGUCGUCAGACGGGGAGGAGAAGGGGCGGCGCCACCGUCGAGCGGGGAGGGGGCGGAGUGGGCCGGCGGGGACGAGAGGAGGAGCGGCGGCGUCUUGGCGAGGAGGAGGAGCGACGGUGGUGGCAGCUCAUCGAGGCGACGCAGCGUCGGGCGGGGAGGGCGGCGACCAGUGUCAGGCGGGGAGGGCAGGGAGGGCGGCGGCCGGCGUCGGGCGGGGAGAGCGGCGGUAGGCGUUGGGAGGGGACGGCGGCCGCUGGCUGGCCGGAGGGCAGAUGCGCCGCUCCAUCCCCGCGUCGGGCGCGUGUGACGAAGCGAGAGGAGAUAGGAAUAGAAUGUCGAACCGUUUUUUCAUAAUGGCAGAGGUGGGUAAUUUUUUCUCUCAAAAGCGGGUGAAAGUAGGGGUAGAGGUACUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.99%
ME_num:
MEP:
35.16%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
2.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.88957234687657 | 0.000494220801204981 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.204846059412 | 0.0423603121595242 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.24176347256452 | 1.12790627782084e-28 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -3.04164496647692 | 0.0253873450185044 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.62867918121412 | 0.0243646451140623 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.49385031338319 | 0.0228017244978134 |
| 7 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.39562669100442 | 0.00386845137605103 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.68220665264513 | 6.44171129847847e-13 |