RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6019

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

24311066

End:

24314179

Strand:

+

Ref_name:

OSA-LNCN6019

Sequence
(OSA-LNCN6019.1):

CAUUAUAGUAUCACAGCUUUGGUCCCCAUCUUGUUCGAUCUCUUGAGCAUGCAUGCUCUCCUCCUAGCUUAGCUUUCCCUUCCUUCAACUCUACUCAACAAGUCAAAGAUCGAGUCCUCUCUCUAAAACUUCUUCAUCCCAAUCAAAAACUCCUCCCAAAACCUUCUCAAACCUCAGCUCAUAUAAUACUACUCUCUCUAAAACUCUUCGUGAGAGAGAGAGAGAGAGAGAUGUGAUGCUGCAUGAAGGUUAGAUUUUGGAACAUGUCAAAUCACAAUUGUUCCAGGCAUAUGGGGAGAGGCAGCAACAGGAGAGAGUAGCAGAUUCCUUUGUUGUUCUGCCCACAAGAGAGAACUCACAACUCACAAGUAGUAGCAGUAACAACAUCAGCAGCAGGUACUACUAGACCCACACACAUGCAAGCACAGAUAUGAGUAUAUGAUCUUUCUCCCAUGCCACAAGUGAAAAGAUUUCUCCCUCUCCAUUAUCCUUUGUUUCCUUUUGCCUUUUGUAUUGUUCUGAAUGCAUGCUGCUAGCUACUCCAGCUACUGGUUGCUCUCUCUACACAUGUGUGUAUACAACUACACAUACUAUGCUUAUUUGUACAAAAUUUUGUGCAGGGUUGGAAGCAAGGGAUCUCUGCAUGCUGUGGUUGCAUGACACAGAUGCACAUGUCCCUUUUGGUGGGUAAUGAUGGGGUGCAGGUGGAGGUGAUGAUAGAUUGCCUCAUCUGGGGACUGAGACAUUCCAUCCAAGGGUGCCCAAUGCCAUGCCCUCACAUUCACUCACAGCUAGUAGAGCUAUCCCCCUCCCCUCCCCUCUUUGCAAUAUUCCAUUUGUUUGCUAAUGUGUUGUAUCAAGAUGCCCUUGAUGUGAGUGUUCACUGCCCUCUCUGUCCCUCAUUUUUUGCAUCUCUCAUUCUCAUGCAUUGCAUACCAUGUACAACUACUGCUUCAGCUAGAAUUGCAUGUGAUGUAUAUAUAUGAUAGUAUAUCCUUUGCAUCUCGGGAAAAUAUGUAGUGCAAAUCACAUAUAUAGUGGAAACUUGAAAACUACCGUUGAAUCGAGAAAUGGACGUCCGAGAUUCGUCCACGUCAUCAUGAGUUAAAAUUUAACUCGCAGAUUCACUCAUGAGUUAAAAUUUUACUCGGAGUUAAAUUUUAACUCAUGAUGACGUAAACGAAUCUCGGACGUCCAUUUCUCGAUCCAAUGGUAGUUUUCAAGUUUUCACUACAUAUGUGGUUUGUACUGUAUAUUUUCCCUUGCAUCUCCAUGUAUCUCAAAAGUUACAUGAGUGGCACUUGCUACUGUGCAUGUAGUAUGUGUAGCAGCUAGGUUAUAAAUUUCUUUAUGUGUAACAUGUGUGUGAUGCAUAGUAUAUGCAAUGUGAAACACUGACACAGCUAGACCAGGUGUGGGGGGUGUGCUUGUUCUUGUUGCAAGGAAGUUAUCUGGAGGCCAUCAUCAAUGAAGAUCCCACCAAGGGACAAAACAUGAGAUGGUUGGAGACUUGGGUCUGUCUAGUCUCUAUUCAACCAUUUAAAGCAUUGCGUGUGUAGGCUACACUCGGAGAGAGAACACAGAGCAGCCGUCCAAACCGUCUGAAAUGAUAACUUACUCUAAGCUAGUAGGAGUGCUAGUAGUACCCUCUAUAUGUGCAAUUUUAUUCGUUAAAAAGGUUUCCAUGCAUGCUUUUUUAGUUUAUCAAUAGCCUAAACCUUUUGAAUUAUUAAGAGUUAAUUAGUCCCAAGUGUGUAUGAUUACUCCCCCAAAUUCUCUUUGUUUUCUUCGAAAAAUUUGCAGUUAUUUAAGUGAGGUCCUCUCUCUCUCUCUCUCUCUCUCUCUCUUUGAUAAACUGAGGUUCUCAAGUUUCAUGUUUUACCAAUUAAUCAAUCCCAAGUAGGUUUUAUUUUUGUUGAUUUAAGUCCUCGGACCUCAAGCCCUGAACAUUCAAUAAUUUAUCAAAUUCAAGGACCUGCAGUUAGAUAAUUUUUAGUUAAUAGAAAAAAAUAUCGCAUUUGUUGCAACGGGUGAAGACUAUUUUAAUCUUAUUAUUGUUAUACGGUUUAGCUAGGGUAAAAUUUACUCUAAAAAUUCGUUUGAACUUUUUUUAAAAAUGUCAUGAGCUACAAUUAGGAGUUUGACUUUCGUCACAAGUUAGCAUGCAAGUUUUUUUAAAUAUAUUUCUUAUACGACUCCUUUUGUAUUUUCAAAAGUGAACAAACAUAAAAGCUAACUCAAACACAAAUCUAUAUUUGCAAAAGCGAACGAAAUUAAAAACCAGCUCAAACAAGAAUGACAUACAAAGUACUGACAAAAACAUAUUUAAUUUUUAUAAUAGUAGAGAUAUGAGUAAAAGGGACCAAAAUCAACAAAGCAAAUAGUGGAGAGCCGGAAUCAACACUGUCUGACUUGGUGAAGAUCUCAAUUACACAAAAAUGAAUGCUUUAAAAGGAUCAUUUAAUUAAAGAAAUACCAAAUAUAUAAUAAUAGCUAGUACCAUCAUAUUAUAUAUACUCCCUUUGUCCCUGAAAGAGUAUUAUCCAGAUUCAUUCAUAGCUAAAAAUACACUCUUUUAGAGAUGGCCGGAGUAUCAUUAUAUGUCUAUAGCAUAUACUUCUACUUAACAUAUAUAAAUACAUACUCCCUCCGCCCUAAAAUAAGUGCAGUUUUGCACUAUUCACGUUCAACGUUUGACCGUCCGUCUUAUUUGAAAAUUUUUUAUGAUUAGUAUUUUUAUUGCUAUUAGAUGAUAAAACAUGAAUAGUACUUUAUGUGUGACUAAAUGUUUUUAAUUUUUUAUAAAUUUUUCAAAUAAGACGGACGGUCAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

440

LEP:

89.43%

ME_num:

51

MEP:

10.37%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.86

Avg Expression:

0.79

Tip: OSA-LNCN6019 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-3.181361970416970.0485249953825931
2Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"5.85068406320029.79852557762682e-06
3Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"6.124540077637990.000160599080659301
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-5.291964741078230.00146234144808104