Chr:
Chr6
Start:
24342060
End:
24344476
Strand:
-
Ref_name:
OSA-LNCN6018
Sequence
(OSA-LNCN6018.1):
UGAGCUUCACAGCAAAAUAUAGUCUUCUAUAACUUCAUAUAAUUUCAUCAAUAUUUCAGUACUUAGUUCAAUCUCAUAACACAUCACUCCAUUAGUACAUAGUUCAUCAGUCAUCACAAAACAAAGUUCAAAUCACAAAUCUGUACGAUAAAAGAAAUCAAAUCAACGGUUUAGGCUCAAGAACACCGUCUGUCUUUAGCUGGACAUACUAGCAGUCUGUCUUUAUUGGAGUGCUUGGUGAAUGGCAAUAGAACAUAUUAAUAAUACAGUUCUCUUCUACAAAAUUAACAGAACAUAAUAUAAGCAGAAGCAGGAACACCUGCUGCCACUGGGCUACUGGCUGCUGCUGCCUGCAAGGCGAGGCGUCGGCGGCGUCGGCGGUGUGGCUAGUGGCCGGCGUCGUCGGUCGUGUGGCUGUGGCCGGCGUCGGCAGUGUGGUGUUGUGGCCGGCGUCGGCGGUGUGGCCAGUGGCCGGCGUCGUCGGCGUCAUCGUCGGUGGUGGCGGCGGCGAAAAUGAGCGAGAGAGGAAGGGCGACGAGACGGCGGCCAGCGGUGGCGUGCUCGACUCAACCUCCUGGAUGCGCCGCCUCUAUCCUAGGUUCAUGGGAGCAGCAAGAUCCGUUUUCUACCAAUCGAUUUGGAAAGCGUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.07%
ME_num:
MEP:
51.83%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.83
Avg Expression:
5.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.82248684908818 | 0.0031344647452317 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.23427370280006 | 0.000802412984947348 |
3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.30800826797755 | 0.00070890192382422 |
4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.51993274205776 | 0.000398166076468002 |