Chr:
Chr6
Start:
24144307
End:
24144748
Strand:
+
Ref_name:
OSA-LNCN6016
Sequence
(OSA-LNCN6016.1):
ACUCCUACAGUAGGCAACACCUUACUUCCAUAAACAUCUUCCUAGUGAAGAGUUUCAAAAUAGCAAUGUCAAGUCAUAUGAUAUCAUUCUCCUGAAUAAUUCGAAUCAAGUAAAGUUCAAAACUGGUCAAGGCCACAUAACCUUUUUCAGUGUAACAAAGAUAUAUAUAUAUAUAUCUUAUUUUAUCCAUCAGAAAUGUAUUGUUCAAGAAUAUGGAGUAUCAGAACUUCAAAAGCCAAUGUAAAAAAAAACUAUUACACACAUAAAAGCAAAGGAAUAGCUGCAUCCGAUUAAAUCUAUGAACAAAAUUGCAGGUUAAUCAACACAUCCUAAUUCAACAGCAGAUCCUACAUAUAUGAAAAGUGUAGUAUUAAUAAGGGAACAAAUUGAAAACAAUAACUAGCUUAAGAUAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.43%
ME_num:
MEP:
37.4%
HE_num:
HEP:
22.97%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.88
Avg Expression:
15.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.12242958133887 | 0.0254527393159904 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.85089862233585 | 0.0442858246050827 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.00632169812156 | 0.000380906757485828 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.00641997928976 | 0.000387442822361578 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.00643890097036 | 0.000382526976573116 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.66489247443691 | 1.06297427392593e-06 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.08297665273665 | 0.0145968904082746 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.99254091295631 | 0.012989676490044 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.89849201878762 | 2.86502081282466e-06 |