Chr:
Chr6
Start:
23876289
End:
23876834
Strand:
+
Ref_name:
OSA-LNCN6011
Sequence
(OSA-LNCN6011.1):
UUCCAAAUUUCAAAUAGCAUCCAAUCCACUUCCAAUAUCACAACUUUUCUUAAAGAGUUUUCCCUCAAGAGAAUAAACAGGGAUAACUGACAUGAGCUAUUGCUAGUGGUUCAAUCAGACUAAACAUUUUAGUUUAGGUGAUAUCUGCCCAAACUGAUGGAAAUAGAAAAUACGCCCUUGUAUGGCUUACAGGCUGUGGCAUCUGUCUGUCUGAGGCAUGGUCCAGUAAAUUUUCAUAUCAGGAAAGCUAGCAUGGUAGUGAUGUGUAAAGGGUACCACAUUGCCACUAAAGGAGAUGCUAGUCAAUUUGGUUGAGAUAGGAUAACAUUUCAUAUUGCAAAUGAUAACCAGAAAACUUUCAGACAGUUGUACAACACUAAUAUAGUUUCUUAUUCGCAUAAGCAUACGAAAUAGACCAGCAUGAUAUGAGCAAAAUGGCAGCAGAAAUGUAUUGUGCAGUUGCAAAGCACCAAUGAUGGUUAUUAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
63.82%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.72
Avg Expression:
7.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.15620742697116 | 0.00334431168710748 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.44773774772066 | 8.52824533032385e-27 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.04798256689955 | 6.07948028949574e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.23958313169125 | 0.00249762404129203 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.63025282193757 | 0.000300591048481406 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.51647360724384 | 0.0498414288974366 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.15948272834456 | 0.00403017499405132 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.25292392488125 | 0.0012286059772628 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.66293984270653 | 0.0363006293471931 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.1170276569316 | 0.0333034895039156 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.22657109598244 | 0.000137017770433032 |