Chr:
Chr6
Start:
23062036
End:
23063567
Strand:
+
Ref_name:
OSA-LNCN5996
Sequence
(OSA-LNCN5996.1):
UUUAUGCACAAAUAAGUUCGGAAAUUACUAGUGAAUUUCCGGGCGUGACAACCGGGCGGGGAGCCGAGAUGGCGGUGGCGGGGCCAUACCGCGGCGACGCGCCGUCUCCGGCGCGAGGGAGGCGGGGCAGAGCGCGGCGAGGAAGGUGGGGCAGAGCCGGGCGGAGUGUGGCGCGCCGGUGGGCGAGGGAGGCCGGGGAUCCGGCACCGCGGUGGCCGGAUCUGGCCGCACGGCGCAGGGCUGCGGCUGCAGUGGCGCGAGGGCUGCGCGGCGGUGGACGGGGCGGUGGCGCGAGGGCCGCGCGGCGGCGGAGGAGGCGGCGUUGCGAGGGCCACGCGGCGGCAGAGGCGGCGGCACGAGGGCCACGCGGCAGCGGAGGCGGCGUCAGCGCGAGGGCCACGCGGCGGCGGCGGCGGCGGUGACAGCGCCGGCUCCAGUGCAAGAACGAGAAUGACGCCGAUGCCGAUGCCUCGCGGGGUUGUGACGACGCCGGUGACGUCCUGCUCGCCGCUCCGGCAGAGGCAGCGCAGGGAACGCCCGCUUGGCGGUGUGUCCUUGCCUCUCUCCGGCCUGUUGUGUGCGGGAAGGAGCCGUGGAAUGGUGGACUGGGCUAGCUGGUUGCCGAGGAGAUGACAGGGUGGUUCGGCAACGACUGUUGUGUGGGGCGGUGGUGGCAAUGGAUGAAAUCGCUGGCAAAAGCCUUGCUUAGCCCUUGGCUGGCGUGACGACGACGAUGUCUUUGGCGUCGUUCCCUUGUUAGAGGCGUCGUUAUGGCGUCUUUCUCCGUCGCCAUCAAUCUCCAGGUGAAAACUGUGUUCCGGUUUCCGAACAGGCGGUGGCGGCGUUUCACGUCGUAUCCUUCAUGGGGGCAUCGUCUUGGAGAACACUACCCUUGCAUCGAUUGUUGUUGGUGUACUCCUGCGUCAGCUCGAAGCACUAGAUACCUUGGUGGAGUCGGAGCUGCUACGUCGUUGGGGUGCGACGAUGCUUGGCAACGAUAACAUUUGCAGUUUCUCUCUAGGAAUGUUGGUGUUGCCAGUACAAGUUUUGGCGUCUCAGGGGCUUUGGCUGAUGUCCAAAGUGUGAGCUCGGUGUUGUUUUGCUCGUUUGGUGGUGCCUCCAAUGAUAUUACGAUCACCGUGAAGUCGAAGCUGCUUGGUCGUUGGACGGCAAGCUCGGCAACGAUGACAUGCGCUUUGUGAUGUCAAAGUCGUGUGCCACUUCUUCAGCAUCUCGAUGUCGAUGUUCGUCUUUGGAUUCCGCCGUGGUAGUUUGGCUAGAAGUUGUGUAGUGCUCCGUGUGCUGUGUGGUUUGUACCGGCCACGGUUGAGGGACUUGGCGAGUUUCUACUCGCCAAGUGGUUGUAUUUUUCUUUUUCUGUAACCCUGUCUGGGUUUUUACUCCUGCUUAAUUGAAAUAUAAUUGGCAGUUCUCUUGCCGGUUUAGUUUAAAAAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.59%
ME_num:
MEP:
28.46%
HE_num:
HEP:
9.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.81
Avg Expression:
4.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.77579867260445 | 0.00399232544557367 |
2 | Azucena // root // control--/--Azucena // root // Al | -1.04506066140529 | 0.0405046240100228 |