RiceNCexp:Browse

OSA-LNCN5985

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr6

Start:

22502185

End:

22502868

Strand:

Ref_name:

OSA-LNCN5985

Sequence
(OSA-LNCN5985.1):

GGAAUGGAUAAGGCCCUGAGUCUAUCCUCCCACGCCCGUGCGGCAACGACGUGCGCCCUAGGUGGUGGUCGCGGCGGCUGCGGGCGCAGGCGAGCAGGCGAGGCGGCGGCGGCCGCGGGGAGGCGGAGGCGGCGGCAGUGGCGAGGGAGCACGCGGAGGCGGCAGCGGCGGCCGCGGGCGAGGCGGAGGCGUUGGCAGUGGCGAGGGAGCGCGCGGAGGCGGCAGCGGGCGAGGCGGAGGCGGCUGCGGGCGCGCUCCUAUGGCUGCAUCCGGGUGUCCUCGUCCUGUCCCUGCUGCUACUCACCGUCAGCGGCCGGGCAAUGCUGCGCCGGCAGCGGCGCCGGAUGGCCGCCUCCCAGCGGCGGAGGAUGAGCAGCUGGCGCUCGACGACGUCGCAGGCAUCUACGAGCUUGCCAGGUGCUUCGGGUGGAUUAGUCCAUUAGUUACCCUUAGUUAAUUACCCUGAAGAUUUAUGAUGUCUGAAAUUAAUUUCAGCGUGUGAUAUUUUAGCUUUGAUUUGGUUUUGUUUUUGCUUCAGAUUGAAUUAAUUUGGCUGAGGCUAGUUGUGUCAAAAUUCUAUCAAAAUGCUGUCGAAAUUUUAUUCAAAUUUUGAAAUUCUCUAGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

123

LEP:

25.0%

ME_num:

218

MEP:

44.31%

HE_num:

150

HEP:

30.49%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

leaf

Tau :

0.79

Avg Expression:

12.50

Tip: OSA-LNCN5985 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	3.94813246880493	0.0114400093403448
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	4.85584646007581	0.000895756254707537
3	Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	-1.97682389520057	0.0289660851863369
4	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h	1.22242480672393	0.0316445840769617
5	Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	-2.89741593229177	4.67925616806236e-10
6	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12	-1.09166866689559	0.00255016910204475