Chr:
Chr6
Start:
22383503
End:
22385266
Strand:
.
Ref_name:
OSA-LNCN5983
Sequence
(OSA-LNCN5983.1):
CACAAAAUCUUACUCCCUUUAUAUAAACUAGCAUGGUGGCCCGUGCAGAUUGCGCGGCUAGUAUCAUUAUAUUUUCUCUCAUAUAAUAACAUAUAUGUUUUUUAUUAUAUUAUUCAAAUUAAAAUGACAACAUAAUUUUAAAUUUUGCAAUAACUUUACAAAACUACUAAUGUGUAAUAUUCAUAUUGUAUUUUAUUAUUUCGAAUUUUCUGUAAAUUAUAUUUCUAUAUAGACUCUAUGCUCUUCUUCCAAUAUUAUUUAUUUUUAUUUCUGAAUUUUUAUUAUUUCUAAUUGUAUUUCUAUGUGGACUCUAAACUCAUCUUUUAAUAUCUUUUAAUUUUUAAUUUCGAAUUUCAGUUACUUCUAAAUUGUAUUCCUAUAUUGACUUUAAACCCUUCUUCCCAUGUUUUUCUUAAUUUUGAAUUUUAGUUAUUUGUAAAUUGUUUUUUUAUACGGACUCUAAACUCUACUUUUAAUUUUAUUAUAUUUAUUUCAAAUUUUAUUUAGUUUUAAAUUCCUAUAUGGACUCUAUACUCUACUUCUAAUAUUUCUUAUUUUUUAAUUCCAAAUUUCUAUUUUUUUCUUGAUUAUAUUUCUAUAUGGACUCUAUACUCUACUUCUAAUAUUUCUUAUUUUUUAAUUCCGAAUUUCUAUUAUUUUCCUUAAUUGUAUUUCUAUAUGGACUCUAUACUCUACUUCUAAUAUUCCUUAUUUUUAAUUCCGAAUGUAUAUUAUUUCCUAAUUUUAUUUUUAUAUGGUCUCUAUACUCUACUUAUAAUAUUCCUUAUUUUUAAUUUCGAAUUUCAGUUAUUUCCUAAUUGUAUUUCUAUAUGGACUAUAUACUCUACUUCUAAUAUUCCUUAUUUUUAAUUCCGAAUUUCAGAUAUUUCCUAAUUGUAUUUCUAUAUGAACUCUAGUCUCCUCUUCUAAUAUUCCUUAUUUUUUAAUUCUGAAUUUUAACUAUUUCUAAAUUGUAUUUCUAUAUGAACUCUAGUCUUCUCUUCUAAUAUUAUUUAUUUUUUAAUUCUGAAUUUCAGCUAUUUCUAAAUUGUAUUUCUAUAUGGACACUGCCUUUUCUUUUUCUCCGAUUAAUGUGAGAAUUUCUAGGCUAUAAGAACGAACGUGGAGGCUAUUCCUACAUGGACUCUAUACUCUACUUCUAAUAUUUCUUAUUUUUUAAUUCCGAAUUUCUUUUUUUCUUAGUUGUAUUACUCUAUACUCUACUUCUAAUAUUCUUUAUUUUUUAAUUCCGAAUUUUUUUCCUUAAUUGUAUUUCUAUAUGGACUCUAUACUCUACUUCUAAUAUUUCUUAUUUUUAAUUCCGAUUUUUUAUUAUUUCCUAAUUGUAUUUUUAUAUGGUCUCUAUACUCUACUUCUAAUAUUCCUUAUUUUUAAUUCCGAAUUUUAGUUAUUUCCUAAUUGUAUUUCUAUAUGGACUAUAUACUCUACUUCUAAUAUUCGUUAUUUUUAAUUCCGAAUUUCAGUUAUUUACUAAUUGUAUUUCUAUAUGGACUUUAGUCUCCUCUUCUAAUAUUUCUUAUUUUUUAAUUCCAAAUUUUAACUAUUUCUAAAUUGUAUUUCUAUAUGAACUCUAGUCUCCUCUUCUUAUAUUCUUUAUUUUUUAAUUCUGAAUUUCAGCUAUUUCUAAAUUGUAUUUCUAUAUGGACUCUGUCUUUUCUUUUUCUUCGAUUAAUGUGAGAAUUUUUAUGCCAUGAGAGCGAACGUGGAGGCUCCUUUUUUUAUUCGUAUAAUAAUAUAAUAGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.01%
ME_num:
MEP:
7.93%
HE_num:
HEP:
3.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.91
Avg Expression:
3.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.4866041012068 | 0.000110784964535173 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 10.0954367352673 | 6.39891629054719e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.38555908032695 | 3.08066074155203e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.11090812917445 | 5.90209014015349e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.93147368558139 | 0.00281231382407697 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.51809909844849 | 5.46699361903584e-05 |