RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5980

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

22359363

End:

22360627

Strand:

.

Ref_name:

OSA-LNCN5980

Sequence
(OSA-LNCN5980.1):

CCAACUUAUAAAAUCAGUACAAAUGAAGUCCCUCGGCGAUAUUGAACCUGGUUUUGGCUGACGUGUCGUCGACAUGGCUUAUUUGACUAAGUCUUCGUACCACGUGGCAAUGAUGUGGCGCUUAAGUGGCAAUCUAAUCUAAAAAAUAAUAAAAACUGUGGGACCCACAAAUCAGGCACAUACAAAAUAAUAAAAAAUGUGGGACCACGCGGGACCCACAUGAUGGGGUCAUUCUUCUGUGUUCGCAACCGGAAAUCCCCAAUUCACCGGCGGAUACGACGCAUCUAGCCGGGGGCUCGCCGGCGAGAAGCAAAUCGACACCGCCGCCAGAAUGUGUAACGGAAUCAGCUCGUGCAGGUAAGACGAGCGGGCGGUUUUCCGGCGGCCGCUGCCAUCGUUCGGGCUCGAGCGGAGGGCCGCAUGUCGGGCCACGCGGGCUUCUCUCCGUCGGGCGCCACCCUUCUCUCCAUCCUCUCUCUCUCUCAGUUGCUUGGCGGUGGAGCGGGGCGGUCGGAGCAGGCGACGGGCGGGGCAGAGCGAGGUGGGCGGCGGCGUCCGGAGCAGAGCGGCACAGCCGCACAGGCGAGGAGCAAGGCGGCGGAGGACGACGACAGCGCCGACGCCGUGGAUAACACUAAGUCGGGGUUCUUCGGCACGCAGUCUUCGUCGUCGCGCCUCGCGGCGAGGCCCGUGCCUGUCCCGGCGGCCCCAUAGCUCGGCGUCGGGGUGGCGGUGGACGCAUUGGUGGUCGGCGAGGACGGGCGGCCGAGAUGGCAAGCUCGAGCUCGCCGGCUCCCCUCUCCUCUCCCUCGCCUCUGUCCUCUCCUCAUCGGCUGCCGCUUGCCGCGGACGGGUUCGCUACCUCCUCCUCGCGAACCUCCGACUGCCACAGCCGCCUCUUCUCCGCCGCCGCGGAACGCCGUGGCUCCCUACUCACCGGUCACCUCCCAAUGCUGCUGCAGAGGCGGCACAGGGGGAGGAGGAUGGAGGCGGUGGGCCGGCGAGGGCCGGGGGAGGAAGGGAGAGAAAGGCGGCGGUUCGGAGGUGGAGUGCGGCGGUGGCGCGCGAGGUCGCCGAGGGCGCCGCCGGCUGCCCGCCUCGCUCGCCUGCGGGAAGAGGGUGAGGAUGAAGAGGGGAGAGGAAAGAAGGUAUAAGGCUGACAUGUGGGGCCCACGUGGGCCCCACCAUUUUUAUUUAAUUUUUGUGUGUGGCUGGCGUAUGGGGCCACGAUUUUUAUUAUUUUUCAAGUAUCGAAUUGCCACAUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

369

LEP:

75.0%

ME_num:

113

MEP:

22.97%

HE_num:

9

HEP:

1.83%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.95

Avg Expression:

4.07

Tip: OSA-LNCN5980 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h1.464373543064520.0210358664088543
2IR64 // panicle // Dawn--/--IR64 // panicle // Dusk1.289480086193920.0180752126562206
39311 // leaf // control--/--9311 // leaf // salt1.10280603333630.000981080631035131