Chr:
Chr6
Start:
22148436
End:
22149437
Strand:
-
Ref_name:
OSA-LNCN5975
Sequence
(OSA-LNCN5975.1):
GGUUGCGAUAAAAAUCGGGACUAAAGAUCUAUUUUUAGUCCCGGUUGUUUAUACCAACCGGGACAAAAAUGAGCUGCCGAGCGUCUGCCGCUACCCUCUCCUCGGUACCCCUCCCCUUUUUUCUCUCAUUCAUUAAGACUCCCUCUCCUCUUCCAUUUUUUCCUCGGUAUCCCAGCCUCCCUUCAUCUCCCCUUCCUCCCCCUUCCCCUCUCCUCCGAUUCCCCUCCCCACCUCCUCCGAUUCUUCCCCUCUCUGCUGCGGGCCGAGCGGCGGCGACGGAGGUAGCCGGCCGCACAGCAGGCGGCCGUGCGGCGGACGGGUGGCAGCGGCCGUGUGGGAGCCGGUCCGGCGGCGGCGGCCAUGCGGUGGUGGCGGAGUGAGGCGGCCAUGCGGCGGUGGCGGAGCGAGGCGGCCGGUGGGGCCGCGCCAGUCGGCGGCGAGCAGGCGGCCGGCGGGGCCGCAGGUGGCGGCCGGUGGCGGCGGCGGCCGGUGGGGCCGCGCCCGGCGGCAGCGGCAGCCCGCAUUGUUUUUUUUUUAAUUAUUUGUGAUUUCACUGAGAUGUACUUUUGGAUGGAUAAUUUUGUGAUUCAUUGCACAUUUGUGUGGAUCUGUGAUGUAUUUGAUUUGUUUGUAAUUUUUAUAGGAUUUGUGAUGUAUUUGAUUUGUGUGUAUAAGUAACUUUGAUUUGUGAUGUAGAUUUGGGAUGUUACUUUGAUUUGUGGAUUGGGGGUUUGAUUUGGGAUAUGUAUCCCACUUGAUUUAGGAGAAAAUAAAAAAGAAAAAGGGGACCAUCUCACUGCCGCAACCCUCUCUUUAGUCCCGGUUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.6%
ME_num:
MEP:
10.98%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.96
Avg Expression:
2.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 3.30272097565591 | 9.70670568097308e-14 |
2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.74795792913602 | 0.00471534306126192 |