Chr:
Chr6
Start:
21818910
End:
21820093
Strand:
-
Ref_name:
OSA-LNCN5972
Sequence
(OSA-LNCN5972.1):
GCCUUAUCUAACAAUAUUGAUGGGAUUACAAUAAUAUGAACAUUUUUCCAGGUGAAAUUAGGGUCCAGAUUAAAAUCAUAUGAACAUGUUUAGCCUAUCUGCCGACAGCAAUGAAAUUAAAUAGUACAAACUAGAACCCAGCACCAAACGCACUAACAAUAAGAUCAUGCACAAUGUAAAUAAACAGAAUAGUGCAUUCACUGAAAACUCAAGAGAAAAGAAAAUAGCAGGAAGCAUUUGGACCCAAAUAACAACAGCAAAUGUGCCAGGUCAUACUGAGUCAGCUCCUGCUCAAUUGCUAUUUAAUCAAAAGUAACUCCCAUUUCCCAAUUCAAACCAAAUGCAAUAUAAGCAUUUUAUCUUCCAAACAAAAGAAUUCAACACACAUGACCAUCAAUACAGCAGAUACAUGUUAUUUUAGUAUUUACUAUUGGAAAAUCCAAAUCAGAAAAAAAAACAGUGCAAACAUAAUCAACCAAACAAAAAGAUAAAUAUACCCCUGUAUGCAUUAGACAACAGACAUGCACAACAUGUCUCAACGACUAGAUGGAACAACAUGAUUAAAAGCAAUGCAGCUUAAUCAUGAUUGAAGCAUUCGCAUAGCAUCUAUGCUUAAAAGUUAAAAUUCCUAAUGAAGUUACCAAUGGACAAGUUUCUAAAUUUGGUUAACUAAGUUAGCCCAAGCUGUUCAACCUGCUUCUACAUUUCAAUGUGAAAAUACACCUACACAAAACAAAGGUACAAGAUUGCUUCUUAAAAGUAUUACAAAGUAGCAUUUAAGUUCUAUGGCUUGCAGAUUGCUAGAUUCCUUUUCACAUCUCAACCUAAGCAAAAACAAACUUUAGUUCAGUUAGUCCUGCUAUCCUAAGUUAUUAAGCACAACAACAAGAAACCUAUCCUUUCAGAGAAACACUCUUCCCUAAAUUCUUCUUUAGGUUGCUAGCUACUGAAGGACGCUACUUCAUUCACAUCUACUAUAUGCUACUAGUAUUAACCUCUAAAAAUCAUCUCUUAAACACGUUGCUUUGCACAACUAGAAUUCUCAUGUUUAACAAAAAUCCCCCAAAAAGAAUCCAUCCGCUCUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.98%
ME_num:
MEP:
68.29%
HE_num:
HEP:
7.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.80
Avg Expression:
6.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.18059813369704 | 3.20172398989105e-06 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.53328404988729 | 0.000533666525427284 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.23502079069131 | 0.0478970208905759 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.47924881222129 | 3.36318818394098e-10 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.30381706041442 | 0.0363073400325425 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.30373024531148 | 0.0366034817820218 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.3035275415251 | 0.0364412741237829 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.56217816296445 | 0.0297654536720877 |