Chr:
Chr6
Start:
21596573
End:
21597172
Strand:
-
Ref_name:
OSA-LNCN5969
Sequence
(OSA-LNCN5969.1):
ACCCAGCACCGAGUGCACGGUGCUGCAGCUCUCCGCGCCACCGGCCGCGGCGGCGCAGCAGCUGAUGGCGUCGAGGCCCAGCUGGUGAUAGGAUGGAUUGCUGCUAGUGGACAUUGUCACUAUAGCUUACUAGCUCCAACUCCAAGCUUGUAGUAGUAGUAGGAGUAGAUAGCUCUUCACUUCCAAAUCUAAAAAAAGACCUGCAAGGGCAGCAGCAUGCAGGAGAAGGAGAAGCAUGAGCCAAAUUAUUGGUGACAUGAACACUGCUGCUGAUGCUGCUGCUCAGAGACAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.89%
ME_num:
MEP:
6.5%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.13154310128524 | 0.00923985818427648 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.56490460084149 | 0.0264948800101394 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.93872646148504 | 0.000950781217714891 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.09863034374601 | 0.0138631241811382 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.8894055024364 | 0.00366991076213889 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.37715021114665 | 0.00680001894183156 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.75878149139567 | 0.00922442568884246 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.87738795864743 | 0.00166130067982825 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.08840783363527 | 0.00113527208439772 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.8308446280281 | 0.0245256864756911 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.93553583648185 | 0.000111546377578653 |