Chr:
Chr6
Start:
21255036
End:
21260506
Strand:
+
Ref_name:
OSA-LNCN5963
Sequence
(OSA-LNCN5963.1):
CUCUCCCGUUCUCUCUUCCCCAAGCGCGCGCCUAAGUUGUAUGCAAGUCCAAGCACCUGGGUUGCUGCAAGCUCCAAGGAGAGGGAGGUCCAGCGCCAGGCCUAGGUGGCACACGAUAGCAGUGUGGUGGACGGCGUUAAAAAAUCGACCAGGCGGUGGCAGCCCUUCUCCACUCUCGUUCAAGGUGUCAGCGUGGACGUCGGCACCUCACCACCGGGAGCAUGCAGGAGAGGACUAUAAGAACGGGUGUGUUGAAAUUUAUUUUUGAUGUUUCAGUUGGUAAUUAGUUUGAUGUUUCUUUGUUUGGAUUAAAAUGUUGCAGUGGGAUUUUAGAUGGUGUUUCAUAACUCGGUACUUUAUUUUUUUUAUAUUUGACCUUAGGAACUUAAAAAUCAAUAAUAAACAACUAUAUAUGUAGAAAACCCAAAAUUUAAAAAUGGCUAGGCUUAUAAGCAGAAGGUUAACUAUGGAGCAAAAUAAAGUAUAAGAUAGAUUGGCUUUUAGCUAGACGACAUAACUUAUAUACUUGGUCCAAGUUGCAUCUUUAUUCGAUAUCAGUAAAAAUCUUUAAAUAAAUAACUAAUAUGGGGUGUUUUAUGACAGUUUAGAUCAUAUAUGAUGAUCCGAAAGGAACAAAAAAACUAAGGUGAUGUAGCUUUAUAGAUAAGGUGAUGUGAGUCAACAAAAGUAAAGAGAAAUAAUAUUAAUGCACUUAGCCACUUACACUUAGUGGGAUGAAAUUAUAUAAUCCGUAAGAUAUAUUGAGGGGUUCUCUCCAAAUCUGUCUCUGUCCCGUUUUUUGGUUCUAGAAAAACAUAUAAGGUAGGGACAUGGGUUAGUAUACAGGAAAGUGGUAUCAACAAUAUUAAUAUUAAGAUAAAUAACUAUUGAUGACAUAAUUAGUAUUCCCUCCAUCGUAAAAUAUAAGGCUCAAUCACUCCUAACGCAAAGACCAAGAAGAAAUUUAAUCAACCCCUUAAUUGGAUCACAUCCAUAUACAUGCAAGCAAUGUGAUUGGGGGUUUAAUCGUAGAGGAUUUAAAAUAAAUCAAAUUUAAAGGACUAAGCGGUAAUAGUUAACUUAUGCAUACAUGCAAGUUUUAUAUUACUAGCAAAAAUGCCCGUGCGUUGCAACGGGUAAAAAAAAUUCUAAUGAUAAUAUAUGUUUUUCACGCAUAAUCAUGUCAAUGACAAUGUUUCUAUUUUAAUAAGUGGCUUGUUUUUUUAUAAACAGUGUUUUUUCCUUGCGCGAUUUUCUCAAACCAUUUUUCAGAAAGGAAAAAGUAUGAAUUACCCCCUCGAACUAUAGUGGUCGUCCGAAUUACCCCCAUGAACCACAAAACCGGACAUUCUUCAACCCCCAACUAUAUAAACCGGACGAAUUACUCCCCUUGAC
Sequence
(OSA-LNCN5963.3):
CUCCCGUUCUCUCUUCCCCAAGCGCGCGCCUAAGUUGUAUGCAAGUCCAAGCACCUGGGUUGCUGCAAGCUCCAAGGAGAGGGAGGUCCAGCGCCAGGCCUAGGUGGCACACGAUAGCAGUGUGGUGGACGGCGUUAAAAAGUACUUCCUCCGUUUUAGUGACCCUCACGUCGAGCAGAUCGACCAGGCGGUGGCAGCCCUUCUCCACUCUCGUUCAAGGUGUCAGCGUGGACGUCGGCACCUCACCACCGGGAGCAUGCAGGAGAGGACUAUAAGAACGGGUGUGUUGAAAUUUAUUUUUGAUGUUUCAGUUGGUAAUUAGUUUGAUGUUUCUUUGUUUGGAUUAAAAUGUUGCAGUGGGAUUUUAGAUGGUGUUUCAUAACUCGGUACUUUAUUUUUUUUAUAUUUGACCUUAGGAACUUAAAAAUCAAUAAUAAACAACUAUAUAUGUAGAAAACCCAAAAUUUAAAAAUGGCUAGGCUUAUAAGCAGAAGGUUAACUAUGGAGCAAAAUAAAGUAUAAGAUAGAUUGGCUUUUAGCUAGACGACAUAACUUAUAUACUUGGUCCAAGUUGCAUCUUUAUUCGAUAUCAGUAAAAAUCUUUAAAUAAAUAACUAAUAUGGGGUGUUUUAUGACAGUUUAGAUCAUAUAUGAUGAUCCGAAAGGAACAAAAAAACUAAGGUGAUGUAGCUUUAUAGAUAAGGUGAUGUGAGUCAACAAAAGUAAAGAGAAAUAAUAUUAAUGCACUUAGCCACUUACACUUAGUGGGAUGAAAUUAUAUAAUCCGUAAGAUAUAUUGAGGGGUUCUCUCCAAAUCUGUCUCUGUCCCGUUUUUUGGUUCUAGAAAAACAUAUAAGGUAGGGACAUGGGUUAGUAUACAGGAAAGUGGUAUCAACAAUAUUAAUAUUAAGAUAAAUAACUAUUGAUGACAUAAUUAGUAUUCCCUCCAUCGUAAAAUAUAAGGCUCAAUCACUCCUAACGCAAAGACCAAGAAGAAAUUUAAUCAACCCCUUAAUUGGAUCACAUCCAUAUACAUGCAAGCAAUGUGAUUGGGGGUUUAAUCGUAGAGGAUUUAAAAUAAAUCAAAUUUAAAGGACUAAGCGGUAAUAGUUAACUUAUGCAUACAUGCAAGUUUUAUAUUACUAGCAAAAAUGCCCGUGCGUUGCAACGGGUAAAAAAAAUUCUAAUGAUAAUAUAUGUUUUUCACGCAUAAUCAUGUCAAUGACAAUGUUUCUAUUUUAAUAAGUGGCUUGUUUUUUUAUAAACAGUGUUUUUUCCUUGCGCGAUUUUCUCAAACCAUUUUUCAGAAAGGAAAAAGUAUGAAUUACCCCCUCGAACUAUAGUGGUCGUCCGAAUUACCCCCAUGAACCACAAAACCGGACAUUCUUCAACCCCCAACUAUAUAAACCGGACGAAUUACUCCCCUUGAC
Sequence
(OSA-LNCN5963.2):
CUCCCGUUCUCUCUUCCCCAAGCGCGCGCCUAAGUUGUAUGCAAGUCCAAGCACCUGGGUUGCUGCAAGCUCCAAGGAGAGGGAGGUCCAGCGCCAGGCCUAGGUGGCACACGAUAGCAGUGUGGUGGACGGCGUUAAAAAGUGGUGGCAUGCAGUGACCCUCACGUCGAGCAGAUCGACCAGGCGGUGGCAGCCCUUCUCCACUCUCGUUCAAGGUGUCAGCGUGGACGUCGGCACCUCACCACCGGGAGCAUGCAGGAGAGGACUAUAAGAACGGAAGCUCCAUCAGAAGUGUGAUGGCGCAAACUUUACAAGUUAUGGUGGCUAUGGUAAAUUGGACAUGAUGCGGCAGUGGAGGCACCGGAUCUGGUGCAGUGUUUCUUGGGAGCACUGGAUCCGGCGACGUGACGAAGGGGACCAGAAGGAUGGCAGUGCUGAUGGCGCCGGAUCCGGCGUGACAUUGCUUGGUAGCCCUAGAUCCGACAGUGGCAGCGAAGGGGACAAGAGGAGUGACAGUGGAGGAGGCAGAUCUGGCGCAGUAGUUCUCAUGACGUUCUAGACCUCGACCUCGACAGUGACGGGCUGAUUCAGUGACGACGGCACCAGGACUGGUGGAUCCGGUGAUAGCGGCCUUGAAAGAAGCAGAUCCACCUCGGCAGCCUCCAGAGAUACGGAUCCGCCACAGGAGGUCUCGGUAGCUGCUUGGGAGCCGCGGCGAUGAUAUUCUUUUUUUUUUGCUAGGAAUAGGAGCUAGGGUUUCUGCAUUAUUGGUUUUUGGACUUUAAUUUUUUUUCACCAAAAUUAUUUUUUAGACGGGCGGCAUAAUGCGCCCGCGUGUGAGAAUUUCGUUUUCACGUGCGGUUGGGUUGCACGUCUAAAAAAGUACUGAUUUUUGUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.93%
ME_num:
MEP:
64.84%
HE_num:
HEP:
27.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.89
Avg Expression:
28.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.10245376957398 | 0.0463050741004629 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.82147297118097 | 7.38560547411642e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.67135189079918 | 0.0119139736364865 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 5.30556716106927 | 0.00142629811732776 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.73977790708684 | 0.00819376531093497 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 6.10443751024895 | 0.000255887303460027 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 6.20665065477937 | 7.60895095799622e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.38664096175503 | 0.0377228593158604 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 5.32900960596772 | 0.0110639924420659 |
| 10 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.81289436985574 | 0.00844755259272073 |