RiceNCexp:Browse

OSA-LNCN5961

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr6

Start:

21214295

End:

21215399

Strand:

Ref_name:

OSA-LNCN5961

Sequence
(OSA-LNCN5961.1):

CGAAAAAGGUCCAUAUAAAAGUAAUAAGAAAAAUCUAUUGAUGGAAAGGGACAUUGAAAUGCAGGAAUCCUUCAUUUUCACAGUUUUUUUUUUGGCUAGGGCAUUUUACUUACAGGAUGUUCCCUUUGCCUUCAACAAUCAGUUUGAUCUAAAACAUAAGCCCUAACGAUGUAUUAUAAAUAUAUCAUCACUGGGUCUAAAAAACUUCUAACUGGGUGAAUGAAUGUAACUGCUCAUUUUAACAGCUAAUCUUGUUGAAGUGGUGUGCUAGCUCUAGGUCAAAUCCCAUCAUCUGUGGCUUGAAAACACAUGCAGACACCUCUCACGUGUACUCACUCUAAUUGACGCUCUCAGAUAGUACGGGGUUAUCAUUUGAAUGGCACUAGCACUUGUCAGCUUGAAACAAGCCAAUCUUUCCAAUGGGCCAACAAGAUUACAGUAACCCUGUAAUGGGCUUGUGGUAACCCCUUACGGAUACUUAGCAGGUCAAUUAGCAAAUUAAGAAUAAAUGAAAUAAAGAUAGGAGAUUAUCUAGUUAGCCAAUGGAUGAGAUUUGUUAGCAAAUUAGAGAUAGAGAUCGGAUUGGUUUCUCUGAUAGUAGACAUUAAUUCCUUGGAUGUAAAGUGUUCUCCCUACAGGCCCUAUGUGGCUAGUAUGUACCCCAUCGGGAAUUAAGCAAAAAACCAUAAAGUUCGGCUAACUUGAUCAGAGUCUCCUGAGGUCCUGGGCUCCUGGCACAACAGGCAAACAUGACGCCAACCAGUGCAAUCCCACCUUUAUCGCGGUCUUUGGACCUUUUACCCUAUCCAUUAAUCAAAGCCCAUAACAAACUUAUCAAAUAAGAUACAUACCCACCCUUACAUAGAUGGGAGAACUUGACCCUUAGGAAACCUAUGUCUCAGAUUAAGGAAAUAGAUAACAAAUAAAUGUAAUCUUAUCUCUGUUGCAACACCCAAUUUGAACAGUACCACGCAUGGACAGUAACCACAUGGUACUGUUCAUGUACAGUAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

334

LEP:

67.89%

ME_num:

157

MEP:

31.91%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.74

Avg Expression:

1.54

Tip: OSA-LNCN5961 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	1.51808949298948	0.00898010555743727
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	1.48504012545572	0.00904846440903686
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	1.19595443620133	0.0330311620534273
4	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h	2.07775920799492	0.0105378377567943
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	1.3375280867229	0.0344271154277058
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	1.20552239267131	0.0403163300374958
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	1.26050552566227	0.0419451229277352