Chr:
Chr6
Start:
20858034
End:
20870350
Strand:
+
Ref_name:
OSA-LNCN5953
Sequence
(OSA-LNCN5953.1):
CUUGAGCUGAAUUAUAAGAGGCUCUAUUAUACUAUAUUGUAUACUAGAAUAGGAAGAGAGUAGAGUAGAAGAAGUCGGAAGAAUUCCGGAGUUGUCGGAUACACGGGAACGGCAUGCGUAUGCUUCCAAAUGCCACUCUUCUUCAUAGGACAAUUAUUCGCUUGAUAGACGGCUGACAAGUUCUUCCUUUAUCGGUUACCACUGAUUUAAGCUUCCUUCAUAGAAAUUUCCUGCGACUAAUUAAAAAGCCCAUUAGCUACUGUGUAUUUUCGUCACGAUGCAAAUACUAGUAGCUAGGACAUUCUGCUGCCUUGGAUCAUGACGUUCAAAUGUUCAUUUCUUGGCUAAAAGGCUUAUCGAUCACAAAAU
Sequence
(OSA-LNCN5953.2):
GUUUUUUCGUACACGGGGAAAACGGGGUCAGCGACUCAGCGUGCGCGGAAAGCUUCCCGACUGCAGGUGGGACCAGAUCUCCUCCAUACAGGCAGAAGGGAUAUGGGUGAUGAUGAUGUAUGUGCCUGUGUCAUCUACGAAGCGUUCGUGUGGUGAUUACGUCACGGUGGAAUGGUUUAUGCUGGCGGUGUGGAGACGUGGAGCAAUGCAUUGCGUCGUCUAGUCCACCGUAAUUUCGUACUAGUACUACGUACUAGACCGCCCAUUAGACUUUUAGCGGUUUUUUGCGUGUUAAUCCGAUCGACCCCAUUGUGCUUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.06%
ME_num:
MEP:
7.72%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.38511086295132 | 0.000778627462644005 |
2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.16424740771608 | 1.72420598106681e-05 |