Chr:
Chr6
Start:
20230761
End:
20232419
Strand:
+
Ref_name:
OSA-LNCN5944
Sequence
(OSA-LNCN5944.1):
CAUUCCUCAAUCCUCUUGACCUCUCCUCUCCCCCAAAAGAGCGGCGACGGCGGCGGCGGCGGCAGCGGCCAUGAGCCUGUGAUAUACGUCGACCUGCGACACGAUUCUUUGGUGGCUGGGCUGCGGAGUUAGAGUCUCGGAGGCAGCGACGGCCUCGACCUGUAGACUCGCGACUUGGGGCUGCUGAGGAAGAAGUUUCUUUCGAGUUUUGAGUUUUGACGCCAUGCCCUAGCCGGAGCAACAAGCAAGUCAGACAGCCCGCUAUAGCCUUUCUUAGCCUCUACAGAUACCAGCCGCUAAAAGCCAUAGCCAGCUAUUUUGAACAUUGAAGUGGAGUUGGCCAAUGGAGCUCGAAGCGGUGCGGAUUUGGGUGGCAUAGGCCGACAGAGCUCGGGGCUUCCAACCGCCGCCUCUUGUUCACACCGCCUCCCUACUCUUCAGUGUGCCGCCAUCCACCGUCCCCCUCCUCGUCGCCAAGGUGCUGGGGCAGAUCAGGAUGCCGUCUCCGCCGCUCAUCCUCUAAAGAGUUGCCGCCUACCUCCCUCAGGCACGACACGAAGGAGCUCGAUGGUGAUAGCGACGGGAAGCUCCGUGUGGCAUCAUUCUUCUUCGCGUUCAGUCCUUUUUGGUUGUCGCCGCCACUCAAAGCUCUGUGCUGGGGAACAGGGGCACCGCGUAGUAGCCUCAUGGGCCUGACAAAGGAGGAGACCCUAGGAGGGUGGGUGACUGACUGAUAGGGCCCAUGUGUCAGGUUCGAUGUUGAUGGCUGGUGGCUGGCAGUGGCGGCGACGAUUCCUGGCCAAGAGCGCACAAUUCCCAGCCAGCGAGGGCAUUGCCCAUGUGUCGCACUACGAUUCCAUGCAGCAUGCAGCUUUUCGAGAGACGGCGAAGCAUUGCGGCCUACGGCGAGAAACUGCGAAGACGGGAUGGGGGUCAACCGUGAAAUUGGGAGCGUUUGAAUCAAGUGGCACACAGUGUUAUGGAAGACGAAAUACGGAUGUCGGACGGGGAGAGUACUGCCAAACGAUUAAUCGGAAUACGGAUGAUUAGUCGGAAUAUGACGGAAAUUUAACGUUUUGCAAAUAUAAGUACAUAGUUAAUAAUAGUUUGUCCUUUUAGAGGUAAUUAAAUCCAUAUGAACACAUUCUAGUUUCCUAGUAUAUAUAUUUAAAUAGAACAACCAUAACAUGACAUUAACUUAACAUACACGUACUAAAGUUAAUAAUGCAAAAAAUAUCAUAAUGCAUAUUUAUGCAUUAACUAGUGGUAGGUUCAGUUCAUAAUGCCUGCCAUUGCUGCCAUAACAAAUUAUAUAUAAUAAUACCAUGAUAAUUUGCAUUACACGUUAUUGAAAUCUUAUACUAGUAUUAGUGCAUUUGAAAAAUAUUUGGUCUUCAAAGAGAUUAAUAUAGUAGUACAUGCAUGCUGUACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
40.45%
HE_num:
HEP:
57.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.71
Avg Expression:
20.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.36232265362726 | 3.55213354244099e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.17988828141665 | 1.69644509074053e-22 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.06863497567256 | 8.86865578380753e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.58549769693911 | 1.1464964640745e-10 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.02183201533941 | 0.0209473542118496 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.04811020089354 | 0.000247546608184445 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.01934614063455 | 0.0281997420056752 |
| 8 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.06350546606845 | 0.000278582622345245 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.03451565843066 | 0.0415397528503917 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.20945023534652 | 1.86091510834675e-16 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.11041343040922 | 0.037573785528596 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.29813113377793 | 1.28963913477019e-05 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.10536800428336 | 4.22637279911946e-05 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.24351387693721 | 6.98315163595222e-11 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.22857189991441 | 1.16405161497472e-06 |