Chr:
Chr6
Start:
20189454
End:
20190123
Strand:
.
Ref_name:
OSA-LNCN5941
Sequence
(OSA-LNCN5941.1):
CACCGACUUGUAGGUUAACAUCAAUCAACAUGGAAACAACAAACAGAAACAUAAUCAUUGUCAUCGCAGUGUGGUGCCAAUGAAGGAGUUGUCGUCACAGCUCCGCCACUGCCUACCUUCUCCCUGCUGCCCUCUACUGGUGCAGUUGCCACCGCCGGCCUCCCCCCUCCGGUUGGAUCUGAGAGGAAGAGGAAGGGGAGGAGAAGGCCGUGCCUUCGCACUCUCUUUUGUCGCCGCCGCCUACUUCCCCCCUCUGGCCAGAUCUGGGAGGGAGAGGAUGGGAGGGAGUGGAAGAAAUAGGGAGGGGAGGGCUGCGUCGCUGCACUAGGAUCUGGCCGAGAGGGAGAGGGAGGGCCACGCCGCCGCAACCUCUUCCGCCGCUGCACUUCCCGGCGGGAUCUGGCCGGGAGAAAGUGGAAGGGCCGCACCGCCGCACCCUCUUCCGCCACCGCCGCCGCACUCCCCAGCCGACAGGAUCUAGGAGGGAGAGAGGGAGGGGCGAGGAGGGAGGGCCGCUCCACCACACCCUCUUCCGCCACCGCCACUGCACUCCUCCCUCCGGUGGGAUUUGGGAGGGAGAGGUUGGGGGUGAGGGGAGGGCUGAACCGCCGCACCCUUUUCCACCACUGUCCUCCCCUCUCUGAUGCUGACUUCUACUGUAGGAGAGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.21%
ME_num:
MEP:
10.77%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.76729305940436 | 0.0302966502742149 |
2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.90861597744089 | 0.00549368154622052 |