RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5932

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

19610121

End:

19612027

Strand:

-

Ref_name:

OSA-LNCN5932

Sequence
(OSA-LNCN5932.1):

CACACACUAAAGCAUGAGCUGAAUUACAAGAGGCUCUAUUGUACUUUAUUGUGUACUAGAUUAUGAAGAGAGUAAGGUAGAAGAUGUCGGAGGAAUUUCGGAAUGUCGGAACUGCCAAAUGGAGUAAUUAAGAGACCCGGUUGAUGGCCAGCAUCAUCGCCGGUGGAGUCAGGAAAGCCGGUAACUGCGCGGAGAAUACCCUGUCCUUGAACGGCUCCACCUCGCCGGCGCAAUUCCGCAUCCACUGCGAUGAUGUCUGAAAUGCCCUGCCUGUGUGGUGCCCCCAAGUGCUCUCUUUCCCCUUCCGUGUUCCCCGUCUCCGCCGCCAAAGCAGCAUGAUAAGCAUUCUCCACCGCCCCGCCAUUUCUAUGUCGCUCGUGUUCCACUACCAUCAAAUCAAAGCUGAUUCGUUUGUUUAUAGCAGGAUGGAUGGAGCUUGGGUUGGGUGGGGAUGGAUGGCCACAAAUCCAAGUCCUGCUCCCAUCCACCCAUCACUGCCACCUCGAAGGUGCACCGCUGCCUCGCUGACCCUUCCACCACUGUUGCCAUUUGCUUCUUCAAGCUGUAACCCAUGGCCCCGGCCGCCAGAUCCAAGAGCGAGAAGAGGGGAAGAUGAACUAUAGAGGGGAUGAAGAAAGAAUGGGUUUUUUAAGAAGAUGACAUAAUCUGAUAGUAAUUGUAUGGUUCCAAUUUUACAAAAUUGUAAUAGCAUGUAUGUGUUAUCACAAAAGUAAUGGUAUUUUUGCAAUGGCACGAAUCAAAUUAACUCUAAAUAUUUGGCCCAGUACUAAUAGGUAUCACGUCCG

Sequence
(OSA-LNCN5932.2):

CACACACUAAAGCAUGAGCUGAAUUACAAGAGGCUCUAUUGUACUUUAUUGUGUACUAGAUUAUGAAGAGAGUAAGGUAGAAGAUGUCGGAGGAAUUUCGGAAUGUCGUACUAUGACUACGGCCACAAUGGCAGCUUGUGGUGGCAGCAUGGAUGAUGAAUGCGGUUGUGGCAAUGAAUGGGCGGUGCUUGCCUGCUGUAGUGCCGCUGUGGCAGAAGCUCAUCAUCGGCCACAAGGAACUGCCAAAUGGAGUAAUUAAGAGACCCGGUUGAUGGCCAGCAUCAUCGCCGGUGGAGUCAGGAAAGCCGGUAACUGCGCGGAGAAUACCCUGUCCUUGAACGGCUCCACCUCGCCGGCGCAAUUCCGCAUCCACUGCGAUGAUGUCUGAAAUGCCCUGCCUGUGUGGUGCCCCCAAGUGCUCUCUUUCCCCUUCCGUGUUCCCCGUCUCCGCCGCCAAAGCAGCAUGAUAAGCAUUCUCCACCGCCCCGCCAUUUCUAUGUCGCUCGUGUUCCACUACCAUCAAAUCAAAGCUGAUUCGUUUGUUUAUAGCAGGAUGGAUGGAGCUUGGGUUGGGUGGGGAUGGAUGGCCACAAAUCCAAGUCCUGCUCCCAUCCACCCAUCACUGCCACCUCGAAGGUGCACCGCUGCCUCGCUGACCCUUCCACCACUGUUGCCAUUUGCUUCUUCAAGCUGUAACCCAUGGCCCCGGCCGCCAGAUCCAAGAGCGAGAAGAGGGGAAGAUGAACUAUAGAGGGGAUGAAGAAAGAAUGGGUUUUUUAAGAAGAUGACAUAAUCUGAUAGUAAUUGUAUGGUUCCAAUUUUACAAAAUUGUAAUAGCAUGUAUGUGUUAUCACAAAAGUAAUGGUAUUUUUGCAAUGGCACGAAUCAAAUUAACUCUAAA

Sequence
(OSA-LNCN5932.3):

CACACACUAAAGCAUGAGCUGAAUUACAAGAGGCUCUAUUGUACUUUAUUGUGUACUAGAUUAUGAAGAGAGUAAGGUAGAAGAUGUCGGAGGAAUUUCGGAAUGUCGAGAUGGUGACAGCCCUCAAAUACUUAAAGUCCUCUCUGUCCGGGUACGCAGAAGAGCGAUAUCUGGAAGCAACGGGUUGGCUAGUGCCUGAAGUAUCACGUUAGGAUUAAACUGAGCUUUCCGUAGACACUGUUUCUCAUUAGGAAAUGUUCUCUACCUUUUGCCUACAUUUGCUUUGUGUCCUUGGAUGAACCUAAAGAAGAGCUGAGCAUACAUGUUCCCUGUGGAAAUCGAUUCCUUGGAAUACUCCCAGUACUAUGACUACGGCCACAAUGGCAGCUUGUGGUGGCAGCAUGGAUGAUGAAUGCGGUUGUGGCAAUGAAUGGGCGGUGCUUGCCUGCUGUAGUGCCGCUGUGGCAGAAGCUCAUCAUCGGCCACAAGGAACUGCCAAAUGGAGUAAUUAAGAGACCCGGUUGAUGGCCAGCAUCAUCGCCGGUGGAGUCAGGAAAGCCGGUAACUGCGCGGAGAAUACCCUGUCCUUGAACGGCUCCACCUCGCCGGCGCAAUUCCGCAUCCACUGCGAUGAUGUCUGAAAUGCCCUGCCUGUGUGGUGCCCCCAAGUGCUCUCUUUCCCCUUCCGUGUUCCCCGUCUCCGCCGCCAAAGCAGCAUGAUAAGCAUUCUCCACCGCCCCGCCAUUUCUAUGUCGCUCGUGUUCCACUACCAUCAAAUCAAAGCUGAUUCGUUUGUUUAUAGCAGGAUGGAUGGAGCUUGGGUUGGGUGGGGAUGGAUGGCCACAAAUCCAAGUCCUGCUCCCAUCCACCCAUCACUGCCACCUCGAAGGUGCACCGCUGCCUCGCUGACCCUUCCACCACUGUUGCCAUUUGCUUCUUCAAGCUGUAACCCAUGGCCCCGGCCGCCAGAUCCAAGAGCGAGAAGAGGGGAAGAUGAACUAUAGAGGGGAUGAAGAAAGAAUGGGUUUUUUAAGAAGAUGACAUAAUCUGAUAGUAAUUGUAUGGUUCCAAUUUUACAAAAUUGUAAUAGCAUGUAUGUGUUAUCACAAAAGUAAUGGUAUUUUUGCAAUGGCACGAAUCAAAUUAACUCUAAA

Sequence
(OSA-LNCN5932.4):

CACACACUAAAGCAUGAGCUGAAUUACAAGAGGCUCUAUUGUACUUUAUUGUGUACUAGAUUAUGAAGAGAGUAAGGUAGAAGAUGUCGGAGGAAUUUCGGAAUUACUAUGACUACGGCCACAAUGGCAGCUUGUGGUGGCAGCAUGGAUGAUGAAUGCGGUUGUGGCAAUGAAUGGGCGGUGCUUGCCUGCUGUAGUGCCGCUGUGGCAGAAGCUCAUCAUCGGCCACAAGGAACUGCCAAAUGGAGUAAUUAAGAGACCCGGUUGAUGGCCAGCAUCAUCGCCGGUGGAGUCAGGAAAGCCGGUAACUGCGCGGAGAAUACCCUGUCCUUGAACGGCUCCACCUCGCCGGCGCAAUUCCGCAUCCACUGCGAUGAUGUCUGAAAUGCCCUGCCUGUGUGGUGCCCCCAAGUGCUCUCUUUCCCCUUCCGUGUUCCCCGUCUCCGCCGCCAAAGCAGCAUGAUAAGCAUUCUCCACCGCCCCGCCAUUUCUAUGUCGCUCGUGUUCCACUACCAUCAAAUCAAAGCUGAUUCGUUUGUUUAUAGCAGGAUGGAUGGAGCUUGGGUUGGGUGGGGAUGGAUGGCCACAAAUCCAAGUCCUGCUCCCAUCCACCCAUCACUGCCACCUCGAAGGUGCACCGCUGCCUCGCUGACCCUUCCACCACUGUUGCCAUUUGCUUCUUCAAGCUGUAACCCAUGGCCCCGGCCGCCAGAUCCAAGAGCGAGAAGAGGGGAAGAUGAACUAUAGAGGGGAUGAAGAAAGAAUGGGUUUUUUAAGAAGAUGACAUAAUCUGAUAGUAAUUGUAUGGUUCCAAUUUUACAAAAUUGUAAUAGCAUGUAUGUGUUAUCACAAAAGUAAUGGUAUUUUUGCAAUGGCACGAAUCAAAUUAAC

Sequence
(OSA-LNCN5932.5):

CACACACUAAAGCAUGAGCUGAAUUACAAGAGGCUCUAUUGUACUUUAUUGUGUACUAGAUUAUGAAGAGAGUAAGGUAGAAGAUGUCGGAGGAAUUUCGGAAUUACUAUGACUACGGCCACAAUGGCAGCUUGUGGUGGCAGCAUGGAUGAUGAAUGCGGUUGUGGCAAUGAAUGGGCGGUGCUUGCCUGCUGUAGUGCCGCUGUGGCAGAAGCUCAUCAUCGGCCACAAGGUGGAGAAGCUCCACCAAAAAAUCUCUGCUUAAAAAAAACAAAAGGAAAAACAAUUCAAAUCCUUCUAUACACAGAGCAAAUCCUCCUGUACACAGAUCAACGCUAGUAGUCACCAAUAAAAAUUGAAAAUCAAAUAACAAAAAGAAAACCGAAGCUUAAAUCUCCAUGUACACAGGAACUGCCAAAUGGAGUAAUUAAGAGACCCGGUUGAUGGCCAGCAUCAUCGCCGGUGGAGUCAGGAAAGCCGGUAACUGCGCGGAGAAUACCCUGUCCUUGAACGGCUCCACCUCGCCGGCGCAAUUCCGCAUCCACUGCGAUGAUGUCUGAAAUGCCCUGCCUGUGUGGUGCCCCCAAGUGCUCUCUUUCCCCUUCCGUGUUCCCCGUCUCCGCCGCCAAAGCAGCAUGAUAAGCAUUCUCCACCGCCCCGCCAUUUCUAUGUCGCUCGUGUUCCACUACCAUCAAAUCAAAGCUGAUUCGUUUGUUUAUAGCAGGAUGGAUGGAGCUUGGGUUGGGUGGGGAUGGAUGGCCACAAAUCCAAGUCCUGCUCCCAUCCACCCAUCACUGCCACCUCGAAGGUGCACCGCUGCCUCGCUGACCCUUCCACCACUGUUGCCAUUUGCUUCUUCAAGCUGUAACCCAUGGCCCCGGCCGCCAGAUCCAAGAGCGAGAAGAGGGGAAGAUGAACUAUAGAGGGGAUGAAGAAAGAAUGGGUUUUUUAAGAAGAUGACAUAAUCUGAUAGUAAUUGUAUGGUUCCAAUUUUACAAAAUUGUAAUAGCAUGUAUGUGUUAUCACAAAAGUAAUGGUAUUUUUGCAAUGGCACGAAUCAAAU

Sequence
(OSA-LNCN5932.6):

CACACACUAAAGCAUGAGCUGAAUUACAAGAGGCUCUAUUGUACUUUAUUGUGUACUAGAUUAUGAAGAGAGUAAGGUAGAAGAUGUCGGAGGAAUUUCGGAAUAGAUGGUGACAGCCCUCAAAUACUUAAAGUCCUCUCUGUCCGGGUACGCAGAAGAGCGAUAUCUGGAAGCAACGGGUUGGCUAGUGCCUGAAGUAUCACGUUAGGAUUAAACUGAGCUUUCCGUAGACACUGUUUCUCAUUAGGAAAUGUUCUCUACCUUUUGCCUACAUUUGCUUUGUGUCCUUGGAUGAACCUAAAGAAGAGCUGAGCAUACAUGUUCCCUGUGGAAAUCGAUUCCUUGGAAUACUCCCAGUACUAUGACUACGGCCACAAUGGCAGCUUGUGGUGGCAGCAUGGAUGAUGAAUGCGGUUGUGGCAAUGAAUGGGCGGUGCUUGCCUGCUGUAGUGCCGCUGUGGCAGAAGCUCAUCAUCGGCCACAAGGUGGAGAAGCUCCACCAAAAAAUCUCUGCUUAAAAAAAACAAAAGGAAAAACAAUUCAAAUCCUUCUAUACACAGAGCAAAUCCUCCUGUACACAGAUCAACGCUAGUAGUCACCAAUAAAAAUUGAAAAUCAAAUAACAAAAAGAAAACCGAAGCUUAAAUCUCCAUGUACACAGGAACUGCCAAAUGGAGUAAUUAAGAGACCCGGUUGAUGGCCAGCAUCAUCGCCGGUGGAGUCAGGAAAGCCGGUAACUGCGCGGAGAAUACCCUGUCCUUGAACGGCUCCACCUCGCCGGCGCAAUUCCGCAUCCACUGCGAUGAUGUCUGAAAUGCCCUGCCUGUGUGGUGCCCCCAAGUGCUCUCUUUCCCCUUCCGUGUUCCCCGUCUCCGCCGCCAAAGCAGCAUGAUAAGCAUUCUCCACCGCCCCGCCAUUUCUAUGUCGCUCGUGUUCCACUACCAUCAAAUCAAAGCUGAUUCGUUUGUUUAUAGCAGGAUGGAUGGAGCUUGGGUUGGGUGGGGAUGGAUGGCCACAAAUCCAAGUCCUGCUCCCAUCCACCCAUCACUGCCACCUCGAAGGUGCACCGCUGCCUCGCUGACCCUUCCACCACUGUUGCCAUUUGCUUCUUCAAGCUGUAACCCAUGGCCCCGGCCGCCAGAUCCAAGAGCGAGAAGAGGGGAAGAUGAACUAUAGAGGGGAUGAAGAAAGAAUGGGUUUUUUAAGAAGAUGACAUAAUCUGAUAGUAAUUGUAUGGUUCCAAUUUUACAAAAUUGUAAUAGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

389

LEP:

79.07%

ME_num:

86

MEP:

17.48%

HE_num:

16

HEP:

3.25%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.85

Avg Expression:

2.63

Tip: OSA-LNCN5932 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h3.212136881927550.0221217065195041
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"6.782134586651116.80609562241166e-20
3WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h4.089625889134890.000120310145488444
4Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"4.724881801072338.51024875150265e-18
5Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"2.781223629727190.00434632609228992
6Nipponbare // leaf // control--/--Nipponbare // leaf // drought2.781140967138280.0044497227771279
7Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"2.781035307403510.00436663623104559
8Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day2.373015759510240.00339467596586418
9Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae1.901112075918621.55739214657495e-05
10Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day4.919888240887055.28791328785182e-05