Chr:
Chr6
Start:
19172520
End:
19173342
Strand:
+
Ref_name:
OSA-LNCN5923
Sequence
(OSA-LNCN5923.1):
AAACCAAGCCAAGCCUUCGCGCCAGCAUAUUCUCCUCAGCAUCCUCAUCAAAAGCCCCCAAGAAUCUCCAAGAACCGAGCCUCGAGCAGGCAGAACGGACGUUGUCUUCCCCAGCUCCGACCACCGUCUCCAUCUCAGAUUCCGUUCCUCCGAUGAGUCAAGCCCUUCGGGGAGAUUUUGCUGUCGCUGUUUUCCAGAAAUGAAGCGCCGCCGGCCGCCGACAAGCUACUACGCGUGCUGCUGCUGGAUAGGGAUUUCGGGUAUGGGGGUGAACGAUGAGUGCCCUGCCAGCACCACCGUCGUUGCUUCCCAGCGCUGCUUGGCCGCCGCCGCAUCCAACCGAAGCUGCCGUCGUUGCCAGAAGAAGGCAAGAGCAAAGGAAGCAGUAUAGAACGAUAGAGAAAAAGCAAAAAGAAAAAAAAUCGUACUUACACAGGUGUUCGAAGGGUAGAAUUGUACUUACACCGAUGUUUCUCUCUCUAAUUCCUUCGGAUAUAAUAAAAUAAUCUCACGGGUGUCAAGGAGCUAAUUACCAGUUUUUUACGGUGUCCUAUAGCAAAUACGUGUUCUUGUGAUGUCUCCUAGCUAAUUACGCGUUUUUUGAAUGUCCCGUAGCAAAUUUUGCCUUUGAUUAAUGUACUGACUCUUGCCAUAUGAAUAUAACUUCGUUUUGUAAGUGAUAGAUUUAAUUUAAAUAGAUAGCUCAAGACCAUUGUUAUGCUCAGGACUUUGAUUCUAAUAGAGGCCUACCCAUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.71%
ME_num:
MEP:
48.78%
HE_num:
HEP:
19.31%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.70
Avg Expression:
5.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.17176342685115 | 0.031478217734753 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -3.09912733460272 | 0.00963488451832018 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.18887661046577 | 0.00344538884965995 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.32611507622162 | 0.0457040501498585 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.36126236316539 | 0.0496971628341415 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.7682229738938 | 1.57534940653284e-12 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -3.1805396247484 | 0.00161421875014666 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.71559636502738 | 0.00917960819261235 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.58803615040076 | 0.013279153465203 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.59026077463597 | 0.0061199047172915 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.16983736967333 | 2.00878690425857e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -2.35829834847982 | 0.00700951882835669 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.73916304090868 | 0.0164023139503693 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.1712865053468 | 0.00030235813451177 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.1691074371737 | 5.92922202970114e-05 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.83783502218339 | 1.55626752009055e-05 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.37695677643593 | 0.0150442566821443 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.12190764880267 | 0.0207633924590077 |