RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5918

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

18946575

End:

18947294

Strand:

+

Ref_name:

OSA-LNCN5918

Sequence
(OSA-LNCN5918.1):

CCCACACUACAUGGAAGCAAUUAAAAUAAAAAAGGAAUCACUGGGUUGUAGUUAAAAACAAAAAAAGAAAAGGAAAUUGUUACGGUCUAGUUGCUUAAUAGAGAGGACAGCUCGAUGGGUCCCUCAGCAAGAUGGCACGAUAGAGUGGUAGCACACAAGACAUCUUCUCUCUAUCUGUGAACAACACCUCACCCUAAUCCAUCAGUCACUCGACGGAACCUAAGGCACAAAGCAGAAUGGGAAGUAGAGGACCAUGAUGUGAUGGGAUGGCUGAUGGCGUCAAUCUUUGGCGGCUGAAGGAGUGGGGAACUCGGGGUGGAUGGGGGACGCACAACCAGGAACUCGAACGCCGGUGGAUAGAGACCACGCAAGCAGCGUCACGGAUUCAGUUGCCGCUGCUUCACCAGAUCAACUCCCGCCGGAAGCUUGUGCCAUUGAAUAGUGAUCCACCAUAAGCUCGUUUCGUGGAUCAAGCACAUCUACCCCCUCACCGACACCACUGGCAAGGCACGGGAUCCUCCUCACCGGCGCCACUAGUGAGGCGCCGGAUCAAGAAAGGGGCAACCCGAGAAGCCCGAAUACCUCCGGUUGGUUGCGGCAGGGGAGGGCCGGUGGAAUCACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

171

LEP:

34.76%

ME_num:

217

MEP:

44.11%

HE_num:

103

HEP:

20.93%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.75

Avg Expression:

10.77

Tip: OSA-LNCN5918 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.218850214064070.00627469639211527
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-2.010777870669350.0112707398907448
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.796130213360430.0175702255522452
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.064460837967750.00859308052560016
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.885844670157710.00541966093154308
6Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-2.727765790620570.0303548229714535
79L136 // leaf // control--/--9L136 // leaf // salt-1.487590828378910.00169686484098293