Chr:
Chr6
Start:
17993041
End:
18008635
Strand:
+
Ref_name:
OSA-LNCN5902
Sequence
(OSA-LNCN5902.1):
AUGCUUGAAAAACAAAUAUGCAAAAAUGAUAACUUUCGAUCAUGUAGAAAUAAGACAGCUUUUCUUUUCACAAGAGAAAUGUGAUAACUCAAGCUAAGCUUCAGCUUAUUGUGAGGAUCUAAACAAAAAAAAAAUUAGACAGAUCGUAUUAUACCUUGAAAAGAAAUAAAGUACAAAGCUACAGUUUAAUUUUUCAGAGUCCCGGUUGAAACCAUCAACCUGGGACAACAAGCUACUUACAUAUAGCUAACAAACAUAAGCCAGAAGACAGCAAGCUACAUGGUUAGUCACCUCUACCAAUUGAAUUUCUUCAUACAAUUAUUGGCUAUAAGGAAACGACGUGUCCCUAUCAAACAGAUAAGAUCACCCCCAUAUAGAUUGGCAUCUUAUAGAGCAUGAAAGAGAAUGCCAACACGACUGCUUAAAUGAACACCUGCAUUCUACAGUGAAUUGUGCUUACAGUCCAACCCAUCUGGAGUUGUGGACCUACAAAUCACAGGAGGACAAAAUGGUUCCGAGAGAACACGAUGACGGGUGGCAAUGAGACAUAAGGGACGCAAACAACAAGAACAAACCAAGGCUAGCAUACAGCUCACAACGAUGUGGCUUAAGUUUGGUUCUUUCCAUCUGCGCAACCAUGACGAACGGUCAAAGAAUUAAAAAUUUGUGGAUCAAACAAGCAUACAAGCGUGUACAUCCAGCUUGUUCUCUUAAUGAACAGUACCAAUUGUACCAAAGUAAUCUCGAUUCAUCGAUUUGGAUGGUGGAAUCAGCGCGGAUUGUAUCAUCAAGUGGAGAUGGUUCUUGUACAAAGUAAACAAAAAAUCAAGAAUUAAGGAGGAGAGGAGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
91.26%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.69
Avg Expression:
6.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.84153374021893 | 0.00370395057869307 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.67390957692908 | 0.0294085036981224 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.99489546806844 | 0.00575599666162428 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.47405720857522 | 0.000362883396593721 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.61099790410468 | 0.00462552405595869 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.24793361668622 | 0.000509868658173101 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.40484152409118 | 0.0426033728976534 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.71856153595394 | 0.000298971462065433 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.63957149255775 | 0.000171856214746275 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.84415505055017 | 0.00243982462060669 |