Chr:
Chr6
Start:
17448021
End:
17450497
Strand:
-
Ref_name:
OSA-LNCN5881
Sequence
(OSA-LNCN5881.1):
CUACAGUGCGUCUUCAAGCUCCAGCCGCCAGCCGAACCGAGUCGGCUGCCAUGCCGAGCCGCCUUGCCGCGCCGAAUCCGCCCCAAUCUCUCCCCUUUUCUUCCCUUUUUUUGAGGGGUUUUUAUCCUCUCAUCUUCCUCUAUCCUUACCCCCAAAAAUCGGAGCAAAUCGUUGAGUAUUUUAUCCGAAUCGAACUCGUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAGCGAUUUCUUGCGGGAGGAGUCCGAUCUAUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUGAUCUCCCGUGCCUCGUAGCGCCGCCGCCACGUGCUCCACCCCGCCAUCGUCGCCGGCCGAGCUCCAUCCGCGUCGCGCCGCCGCCUCCGUCGUCGCCGCCGGUCGCCGUCACCACCGUUAGGUGCGCGGGAGGGUGGAGAAGCCCGGCCGCCUGACCCCCGAAGCCGCCGGCCACCGCAGCUCCGGCGCCACCGCCGACCGAAGCCGCCGCCGCCGUCCACCUCGCCGCCGGCCGUCGUCCGUCGUCGUUUGUCGUAUCGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGGAGUGUUCAGAAGAUUAAUUGAAGAUCGAUUAUUGCAAGUUGAAGAAAAAGGAUUCAGAAGGAGAAGACAUUUGGAUUAUACCCCAGUUGAGUUUGUGGGAGUGAAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGACGAGGAUUUUAUGCACAAAUUAAUUCGGAAAUUAUUAGUGAAUUUUCGGGCGUGACAUCGGCGAUACGCGAUGACGCGGAUGCCUGGACGGGAGUACGAUGGAAGAUGGAUCGAUUCACCUUCUGCAGCAUUUUGGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
55.49%
ME_num:
MEP:
44.11%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
1.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.68814612870656 | 0.027985332022773 |
2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.50832424752325 | 0.000929806910611051 |
3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.64120266525905 | 0.00016214669342968 |