RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5880

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

17437257

End:

17438671

Strand:

+

Ref_name:

OSA-LNCN5880

Sequence
(OSA-LNCN5880.1):

AAACUCGGCCUCGGUGAGAGAGAUGGUAGAAGUGCGACAUAAGGAGUGGUACUGAUCUCAAAAUCGUCUGAAAACGACCUUCACCCCCAUGUUCCUACCCAUACAGGCCCUGGGUGCCACCAGAGACAUGCAAAGGGAGGAGAAGACACGUACCUAUUGCCGUGGGCCCGUGGCACCGCCAUACCGCAUCCUCUCCUCUCUUCUCAACAUGGACCCCGCCCCAGCCACCUCUCUAUCCAGGCCUAGAAACCGAGAGAGAGGGAGGGAGGUUUCCUCGAUCACCAGCGUCGCCGGCUGGAAAGAAGGCGACGCCGCCUCCGUCCAUCGGGUCAACGUCGACUGGAUCCCCGGGAACGCUGCCGCGCCAUGGAGCCCCGGAGCACGGCCGCGCCACCGCACCACCGUUGCUAGGGCUUCUUCGUUGCCGCUUCCCUGUGCUGCGCCAAAAGCUUCACCUCCUCGACCUCAGCUAAACACCCCAAGAAUCACCCCAAUACGAGCUUUGUAGAAGGAGAACGUCCAUCGUCUUUCCCGGCCUCGGCCGAACCCCGUCGACUCGAUUCCGGUUCCUCCGACGCUCCGGUGUACUUCGAAAUAGUCGUCGAGGUUUCUCCAGCAGCAGAGCAAGAGCACGAGUAUGUGUCAGAUGAAGGUUUCUCCGAGGAGUAGGCUUCGUCCGUGCCGUCGAGGAUGCCUGUGGAGUGGUGUUCCCGCUGCAGUUCUAGUCAAGGCUUAGCUCCUGUUGUCUUUCGUUUUUCCGCUGCAUUUACGUAAGACUUUUAUGAUGUUUGUAAGACGUGGAUCUGAAUGUCAACAUUGUCAUUUGUGUACCCCGGCCGGUCCUGGACGGGCAUUUUAAUGCACAUUCUGCUUGGAAUUCUAUUCGGGAAUUUCUGGGCAUGACAAUACUGUCCUUGAAUAAUUGUGGUACCCUCUGUUUGUAUCCUUAAGAAUGGUUUUGAGUACUUCACUUGUGCUCGAUUGGGCCUAUACAUGCUUUAUAUGCUACUACUUGCUUAGCAAUGCGUAGAAAUAUGCAAAUACUCAAUCUUAUCAUUUUAUAAUUGAAUUUUGGGCAUUUAUUUAUUUCUGGGCAAAAAUGAAAAUGCUAAGUAUUUGUGAACUAAAAUGAGGAUAAAAUGAUUUUAGACUUGGGCGGCGUGGUGUGUAUAUGGUGGUAGUUGCACAACAAUAGUGAGAGUGUUCGACCGGGUCGAUUAAGGACCGAACUUCAUAUCACCAACUAAUAUUUACCGUACAUCCACAUGUGCUAUCUAUGGGGAUAGCCUUGCCUAACGUUAUUUUCUGUCAACUUCGACUAACAAAAUAAAAUGACCAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

389

LEP:

79.07%

ME_num:

81

MEP:

16.46%

HE_num:

21

HEP:

4.27%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.98

Avg Expression:

12.05

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.955703618829890.0334708698063418