OSA-LNCN5859


Function Link


Basic Info

Chr:

Chr6

Start:

16803720

End:

16805636

Strand:

+

Ref_name:

OSA-LNCN5859

Sequence
(OSA-LNCN5859.1):

GGUAGAUAUAUGGAGCUUUCUGUACGAAAAUUAGGCGGCCUUAUGCUUUCUGUCAGUCCACUGCGAGGUUAGACGUCACAACCUGCUCUUUCACUCUCAAUAAAUUAAAAAGAAAAGGGAUGUUAUCAUUAUUAUUUUUAAUCUCUUUUACAAGAGAAAUCUUCGAUAAUUUCGGAUGUGGUGAGUAAGGGAUAAUUUUGAGGCAACUACGUGCAUUCAUGAUUUAAGCCAGUAAUUUGCAUAUGUUAUGGUCAAAUUAAGCCAGUGAUUUGGUAUUUUAACUUUACAAGUAGGAAAAGUACGAAUUACCUGAACUAUCAUGGUCGAUUCAAUUAUCCCCCUAAACUCGAAUACCAGAUAUUUUACACCCUUAACUUUACAAACCGGACAAAUACCCUACCCCCUCGGCUUAAUCCGGAGUGGUUUUAGUCUUACGUGGCAGUCCAGUUAGCAAUUUUUUUAAAAAAUAGUGUGGACCCCACCUGUAAGACUCUCAUCACUCUCUUUUUCCCCUCUAACCUCUCAAUAUCUCUCUACUCUAUCUCUUCCUCGAUCCCCAUCCCCCCUCUCUCUCUCCUCCCUCCCCUUGCUGCAGCGUGUGGCAGCGCCCGAUCGGCAAGGCGCACACGACAGCGCACCCUCUCCCUCCUCCCUCCCCUUGCUGUAGCGAGCGGCGCCACCCGGCCGGCAAGGCGCGCACGGCGGCACGCCCUCUCUGGCGCGCGGAGCGGGUCGUGGGCGGCAGCGUGAGACGCGGAGGCGGAGGCCAGGCUGGGUGGCGAGUGGCGGACGAGCACGGCUGGGUGACCACCCGUGCUACUCGACCUGCACUGGCCCCUGUGCGUCACCGUGCGCGCCGAACGCCGGUGCCGCUUGACCUACGCCAGAAGAGGGGGAUAGGAGAAAUAGGAGGCUCGUAGCCACCGGCGCACCGCUCGUUCUUGACAGCGCCGCCCUCGCCUCCACGGUCACCGGCCUCUGCAGCCACCCCGCCGCGUUGAACCCUCUCCCUCGUCGUGAGGAGGCUUGCAACCGUUGGCACGCCGUUCGUCCUCGGCCUCCGCCAGCACACAGGAUUCCUUUGCCUCCAGCAGCGUGCCGCUGCUCACCGCCCGCCGCCGUGCGCCGCUGUCCACCGCCCACCCCCACACGCCGCCAUGCGCAUUUGCACCUGAGAGAGAGAGAUUAGGAAGUGGUUAAGAGGAGGUAUGACAUGUGGAUCCCAUCAUUUUUUUAAAAAAGAAAAUGCUGACUGGAUUGCCACGCGUACGCCACGUAGGAUAAAACCGUUCUGGAUUGGGUCGAGGGGGGUAAUUCGUCCGGUAUUGAAAAUUCAGGGUGAGCAAUGUUUGGUUUUCAGGGUAAUUUGUUCAACCACGAUAGUUACGGGGGUAAUUUGUACAUUUUCCUUUCAAGUAAGAUAUGCUAUUUGCGAUGAGAUUUAUCAAUAGCAUCUGUUGAACAAGUUAUUGGAAAUGAUUUGAUAGACCCCUUUGAUAUAAAUCAAAUUGUCAAGUUGAUUUUUUUUCUAAGAGAAAUCACCUCAAAAGCAAUGCAGAAAGUCAUAAUUGUAAAUUGAACAGAAAUUUCAUGAGGCCCCAUGUAUUAUGGUCAAGGAGAAAAUGUCUUUGGAACAACCUUAAGUUAUGGCCCCAAGGUUACCCAAACACUUGCUCCUGUUUAAAUCAGCUAAUUUUACCAAGUUCCGGCACAAGUUCUCUAAGACAGCAAAGGAAUUAAAUAGGUAAUAUUUUUUGCGAUUACAUAGAAGACGCAUAUACACACACAUAGAAGAAAUGUAUGUAGACUAAAAAAAGAAGAAGAAGAAAUGUAUGUAGAUGUUUCGUUUAAAAACAAAUAUGCCAUAUGAUUAUUAUUUUUUUGCCUCGAUGUUUUAACGGACUUGACCUCACACCC

Sequence
(OSA-LNCN5859.2):

CCCCUCUCUCUCUCCUCCCUCCCCUUGCUGCAGCGUGUGGCAGCGCCCGAUCGGCAAGGCGCACACGACAGCGCACCCUCUCCCUCCUCCCUCCCCUUGCUGUAGCGAGCGGCGCCACCCGGCCGGCAAGGCGCGCACGGCGGCACGCCCUCUCUGGCGCGCGGAGCGGGUCGUGGGCGGCAGCUGGCGGACGAGCACGGCUGGGUGACCACCCGUGCUACUCGACCUGCACUGGCCCCUGUGCGUCACCGUGCGCGCCGAACGCCGGUGCCGCUUGACCUACGCCAGAAGAGGGGGAUAGGAGAAAUAGGAGGCUCGUAGCCACCGGCGCACCGCUCGUUCUUGACAGCGCCGCCCUCGCCUCCACGGUCACCGGCCUCUGCAGCCACCCCGCCGCGUUGAACCCUCUCCCUCGUCGUGAGGAGGCUUGCAACCGUUGGCACGCCGUUCGUCCUCGGCCUCCGCCAGCACACAGGAUUCCUUUGCCUCCAGCAGCGUGCCGCUGCUCACCGCCCGCCGCCGUGCGCCGCUGUCCACCGCCCACCCCCACACGCCGCCAUGCGCAUUUGCACCUGAGAGAGAGAGAUUAGGAAGUGGUUAAGAGGAGGUAUGACAUGUGGAUCCCAUCAUUUUUUUAAAAAAGAAAAUGCUGACUGGAUUGCCACGCGUACGCCACGUAGGAUAAAACCGUUCUGGAUUGGGUCGAGGGGGGUAAUUCGUCCGGUAUUGAAAAUUCAGGGUGAGCAAUGUUUGGUUUUCAGGGUAAUUUGUUCAACCACGAUAGUUACGGGGGUAAUUUGUACAUUUUCCUUUCAAGUAAGAUAUGCUAUUUGCGAUGAGAUUUAUCAAUAGCAUCUGUUGAACAAGUUAUUGGAAAUGAUUUGAUAGACCCCUUUGAUAUAAAUCAAAUUGUCAAGUUGAUUUUUUUUCUAAGAGAAAUCACCUCAAAAGCAAUGCAGAAAGUCAUAAUUGUAAAUUGAACAGAAAUUUCAUGAGGCCCCAUGUAUUAUGGUCAAGGAGAAAAUGUCUUUGGAACAACCUUAAGUUAUGGCCCCAAGGUUACCCAAACACUUGCUCCUGUUUAAAUCAGCUAAUUUUACCAAGUUCCGGCACAAGUUCUCUAAGACAGCAAAGGAAUUAAAUAGGUAAUAUUUUUUGCGAUUACAUAGAAGACGCAUAUACACACACAUAGAAGAAAUGUAUGUAGACUAAAAAAAGAAGAAGAAGAAAUGUAUGUAGAUGUUUCGUUUAAAAACAAAUAUGCCAUAUGAUUAUUAUUUUUUUGCCUCGAUGUUUUAACGGACUUGACCUCACACCC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

265

LEP:

53.86%

ME_num:

219

MEP:

44.51%

HE_num:

7

HEP:

1.42%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.88

Avg Expression:

2.64

Tip: OSA-LNCN5859 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-6.202776443982090.0005584730863009
2Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.567425311071722.20109922887839e-06
3Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.712257904336085.30062901321714e-12