Chr:
Chr6
Start:
16614943
End:
16615831
Strand:
+
Ref_name:
OSA-LNCN5855
Sequence
(OSA-LNCN5855.1):
AUCGAAGCGAGUUUUGCUUGGUGGAGGAUGGCAACGUUGGUCACUUGAUCAAGUGCAGGGCGAGAAGCUCUGGGGUUGCAUUGGAUGUAUCCGAGGUGGAAACAAGAAUCAAAAGGUUGUUCAUGGCACCCCAUGCAAAACAACAAGGUCUUGGUGCCUAGAUUGGUAGUACUUGUGAACGGCACUGAUCAACACCCAACGGACCGAGAGUAUUGCCUUAUGUGUUGUCGUGCUUGUAGUGACUGCUAGGCUCAAUUUGCGUGAUCUAAAGAGAUGUUUGCGGCUAGUUUCUUAACAUAAGGUGAAACCCUUUUUCAAUUACUACGUACAGGACAUCUUACGAAUACACACCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.63%
ME_num:
MEP:
55.89%
HE_num:
HEP:
17.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.87
Avg Expression:
11.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.05747309753378 | 3.85189284415508e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.01541566850845 | 3.51634351008788e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.26854074984965 | 4.59134498554576e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.12860403970065 | 0.00141193742482061 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.49354232449462 | 3.87654504131024e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.67450081732194 | 2.14710593477438e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.74487967550613 | 2.51938495278208e-12 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.8693737960121 | 0.00130530207354495 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.06071532908736 | 0.00320544319171348 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.83201246794266 | 3.46075240960868e-09 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.16937307343497 | 0.0462093142553693 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.95269021489571 | 7.52350731680947e-10 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.64221285160043 | 0.0376139205452637 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.67944201056213 | 5.22176378264659e-09 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.3712996503704 | 5.08826561513697e-09 |
| 16 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.47966989654626 | 0.0404748714177865 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.47959709703877 | 0.0407106032647497 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.47960776938116 | 0.0405736577543693 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.23311423664826 | 0.0379848043094294 |
| 20 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.52736184486867 | 0.0195032713293936 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.40740610464972 | 2.16547642698202e-07 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.7159372453607 | 2.68749368874739e-14 |