Chr:
Chr6
Start:
16613912
End:
16614356
Strand:
+
Ref_name:
OSA-LNCN5854
Sequence
(OSA-LNCN5854.1):
GUCGGCCUGGAGAAAGAGGCACCGGUGGUGAGGUUUGCCCGACGGCGGAGCGGAGGCUCGGGGCUGGAGCUGAUGACAGCGACCGCGAGCUUCCCGCUCCCUCACUUCUCUCCACCUCGAGCUCCAUUUGACGGCGACCAGGAGCUCCCCGUCAUUGCCACUGCUUCUUUAAAUCGACAAGACAACGCCGGCUGUCGAGGAGGCCAUCGUCGCUGUUGCUUCUUCAAAUCCCGCGGACCCCACCUCAUUUUUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.67%
ME_num:
MEP:
21.95%
HE_num:
HEP:
11.18%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
11.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.42621360868859 | 0.00983758644757348 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 4.93563716579006 | 0.038715893155032 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.89735843417211 | 0.0187877062030832 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.53299627098539 | 0.0384405608054785 |