RiceNCexp:Browse

OSA-LNCN5850

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr6

Start:

16393684

End:

16396104

Strand:

Ref_name:

OSA-LNCN5850

Sequence
(OSA-LNCN5850.1):

CCGGCCACUAUCUUGCCAUGCCCAAUCUCCUUUACCGGAGCAACACUAACCAAAUCCUCGCGCCACCAUACUUGCCUCCCUCCGACGAACCCAUUUUUCUAGUUUCCCCUUUCCUUUAGCCAUCCUAUAAGCCACCAUCACCACUUCUUUUACUCGCCGGAGGUGAGCUCUUGUCGUCGCCGUUCCGGCCAUCUCCCUCGCUCUCUCCGCCAGACACUGCCCUUCCCGGGUGCUUCGUGCUCGGGAACACGCGUGGACGCCGACGUCGCCGCCCUCCAGCCACCGGAGCGCCGCUGCCCCGCUCGCCUUCUCCUCUCUGUUCUCACGGCUCUCUCUCUCUGGAACAGAGAAGAGAAGAAGAAGAAGACGAGAGAAGGAGAGAGAAAAAGAAAAGGGGAUUGACAGUGGUUCUUAUGUAAGUCCUCGCGAAGGAGGCAAAUAUAUGCCGCGAAGGGCAAAUGUGAUAUUUACCGAGGCGCAAGUAAAUAUCUUGAUUAUCGCGCGAUGUGUGUGUGAAUUUAUGAAAACCUGGUUGAGAUGACGUGGGGUCUCUCAUCCAGUUCUCUCUAAAAACCCCGGGAAUGCCAGAACUCCUCUCGCUGCUGAUAACGUUACAUUCAAAGCGCAUGGGGACUAGAGUUCAUGGAACAGGUGCCAUAAUUGUUAAUAACCUAAUACUGGGCCAUGACUAAGCUAAUCAUUAUUGGCAAGUCGUGGACUGCGGGUAAAGCGUACAUCUACUGCAGUAUGAAUAUCCUUAAAACUAUUCGAAUAGCCGUGCUCACGGAUUUGAGCAUCGGGACUCAUAUGGUACUUUAGUUAGAAAUAUAAUUCAAGAUUUUCUUAAAUACUGUUGCAUAUCAAACAUGUCGGUUUCUGAAUCGUUAGUUUUGGGAUCCGACAUCAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

198

LEP:

40.24%

ME_num:

263

MEP:

53.46%

HE_num:

HEP:

6.1%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

callus

Tau :

0.86

Avg Expression:

6.35

Tip: OSA-LNCN5850 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.76750156236555	0.0111146218460349
2	Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl	1.80443251473011	0.0397809011205392
3	Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi	2.06379371377677	0.00204914154254902
4	Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	1.74053966199805	0.0224581674380931
5	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h	2.1057436169389	0.0249201718306607
6	Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	4.48947577790547	0.00269577329681859
7	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"	4.8999975728469	6.8528177700369e-34
8	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256	2.60874340598584	0.000445442276436876
9	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279	2.86126380562002	8.92179833823569e-06
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	2.89937801331734	6.87643171698322e-09
11	Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"	2.7090805606316	2.86217707023526e-08
12	9311 // leaf // control--/--9311 // leaf // salt	1.460446667042	0.0226320546530023
13	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-4.47266546740963	0.00540792715722534
14	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8	4.36970921076798	3.12459545273217e-13
15	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12	2.71722519765781	2.31894084170177e-06
16	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105	1.68460114243244	0.0490520159490398
17	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341	2.6544874988288	0.000388727995625959
18	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331	2.53991571013964	8.58813607738735e-05
19	Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"	5.57583569953506	0.0171990622871683
20	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342	2.1893305079077	0.00035022161633323
21	Nipponbare // leaf // control--/--Nipponbare // leaf // drought	5.57575380312931	0.0173575023889021
22	Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"	5.57564687804434	0.0172492892990633
23	Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day	1.93979591118091	0.015076931961629
24	9L136 // leaf // control--/--9L136 // leaf // salt	3.0762320711626	1.2253493055957e-07
25	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-2.91995041070427	0.0107397866989986