RiceNCexp:Browse

OSA-LNCN5828

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr6

Start:

15371442

End:

15372143

Strand:

Ref_name:

OSA-LNCN5828

Sequence
(OSA-LNCN5828.1):

GACGAUAAAAGAAUUUCGUGUAGGUACAUUACACCGGGAUACCCGCAACAUGGCAAGAGAUGAACAUGAAGGUUCAACAUCCUCACCAACAGUGCGGAUGUAUGAGGCUGACUAGGAUCCGACCGGAGAUGCUCCCAGAUGGACCCAAGCACCACACUAUGAGUUGCCAACCAUCCCGAUCUAGCAAAAUGCCAAAUCAAGAUGGGUUUUGUAGAAAGAAAAGCUAAAACGGCUAUCAGAACCGAUUUAGAGAUCAAAAUCAGCCUCUAGGCUGAUUCAGAUCGAUAUAAGGAUAAAGUACCCAUCUCGUGGGCAAAGGGAAAGUUUACGGGACAAACCUACAAAGGUGUAAUCGCACUCUCGCAGCGACGGCAGACGAUUUACGGCGCAAAUCAACAAAGAUGGACAAAAGCUAGGAUAAAGUAGAAAACAUGGCUAGAAAGUAAAAGUAAGAGAAUAAUUCGAUUGAUUGUGUAGAUUGUGUGGUAAAUUGUUUGAACCGGCUUUGUCCCUUAUAUAGGGGUUGGUCUUGCCCUCUACAGGCCCUCCUCCACGUCCAACUCAGAGUAGAAACCAAAGGAAACCCGAAACAUAGCCUCUCGAGUAAGGAAUCCCAAGGCCCGACAAAAACAGACUCUGGCUCGGACUCUGACAGUAUGACCGGCCACAUACCUGCAAUCAGACUGGCCCUACUAGCCGGUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

467

LEP:

94.92%

ME_num:

MEP:

4.88%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.98

Avg Expression:

1.26

Tip: OSA-LNCN5828 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-4.34084162885266	0.0120113433485498
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-3.56004857965434	0.0196350860681008
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.14148896678869	0.0224740528661303
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-3.82010902585263	0.0103821312686748
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-4.31035280086485	0.0153224566107803
6	IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)	-6.72942224687428	0.0300767219616381
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-4.40503742077598	0.00706900154096809
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-4.88819874013755	0.00261881324283309
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-3.39330942884107	0.0302738610758656
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-4.18438636801064	0.00478710428499609