Chr:
Chr6
Start:
14897850
End:
14912714
Strand:
-
Ref_name:
OSA-LNCN5827
Sequence
(OSA-LNCN5827.1):
GCCUGGAGCUAUUUUUGGAAGCACAAACGUAAGGAUCACAUAUAUUAUCCUAUCAUAACAUUAACAACGUUGGACCAUACUUUUGGUGGGUGCUGCAUGCAGUUAUUAUUAUCAAAGCCAUGAAAGGUUCAAGGCUUCCAGCUGCUUGGCAAUUGCUCUUCAGGAUUUCUCUACCUAUUAACUGUUAUUGCCUGGCAUGGGCGCAUAGAAGAGACCACAAUAUGAGGCAAACAUUGGACCAUAGCUAACAUAACUGAAUAUGUGAUGCCACUUUCACUGAUGCUUCUAUGACCACCAGUGCGGUGUGGGAUAUGCAUGCUCUUCAUUACUGUAUAUGGUAUGCUCUUCAUGAAGAUAUGGGGUAUCCAUAAUCUCCACAGGACCCACGACAAUGCUUGAUUUGUAUUGUAUUGCUCAGAAGCUAUUUUCCAGUCAUCAAAAUCUCAUUUGGAUAAGCAGUUGUGUUCUGCUAUAUAUUUUUUGUCCACUGACUCUGUGAACAACCCGGCGAAUUAUACUAAAACCAAACAAAGAUGAUUCAUCUGGACCAGAAUGUGUAUCAACACAAUGCCUGGAGUUAUUCUUUCUUUACUGUUGCAGUGUACCUUUAGGCUUUCUGAUAUAGGGAAAAAUUCUGUGGCAGUGUUAUACUGUUUUCUUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.76%
ME_num:
MEP:
38.21%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.81
Avg Expression:
3.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.3509321728386 | 0.000831227746717504 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.55258920408372 | 9.1566501605895e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.21607488155461 | 0.00065089792861441 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.23513004779375 | 1.20971591947138e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.2404715116309 | 0.00475812242608757 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.85369000015554 | 8.07122013847492e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.01961322455396 | 0.0116888419151582 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.6225134209749 | 9.33381398997549e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.06958046071782 | 1.56704405141542e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.29502303138535 | 4.85895698630677e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.22347799765808 | 0.000391746819261724 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.87346201983554 | 2.71411067284601e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.15297022732913 | 1.67422869467195e-09 |