Chr:
Chr6
Start:
14882040
End:
14889326
Strand:
+
Ref_name:
OSA-LNCN5815
Sequence
(OSA-LNCN5815.1):
CUGCAAUAAGCAAAAUCUUCAACUGGCUACCGCUUGUAAAACUAAAAGAGCACAACUGCAUUCACAAGUAACAUGACAAGUAACAAGGUAACAAAUGUGCAUAAUUGUCAUAAGUUGAAGGAAUUUCUUUCUUAUCAAAAGUGAGAGAAUUUUCUUUAAAAAUUUUUGGCAUUGAAGAUGCUUUUUGGAUUUGCUUCACAAAACACCACAAACCAUUUGUUGUUUGCCAAUGAUUUUCAUCAAGGGGUGAGAUUGUAGAAUCAAGGAGUUGAUUUAGAUUUUGUGAUGAAAAUAUUGGUGGUUUGCUAAUGUUAAUUUAGAGAUUUUAUAAGAUGGUUGAUUUUGUGAAGUGUGCUGUUUCAGUUGACCCUGGCGGUCAGACCGGCUGAGUGCCCCGGUCAGACCGUAGGUGUUGCGGCGGUCAGACCGGCCGGCCCAAUGGUCUGACCGGCAGGAUCCUGAUCGAUGUCGGUUUCGGGUUCUUUUGUUGAAUUUGGAUAUAUCCUUCGGGGAUUUGGCUUCUAGAUGGUUUCUAUGCGUAAGGAUACUGUUGUUAUACUAAUGUGAGUCAAGUUGGGACGAACUUGGGCUCGGAAUAUGGUUUCUUGGUUGUUGCAUGUGCAGGUGUUGCUUGAGGCCUCAGGAGAGUGUUGCCGGUGAUAGAUCGGAGUCAGCUUGGGAGAAGUUGAUGUCCAGGGAUCAUGAGAUCAUGCAGGAUACUAAAGGCUAGAGGUCAAUGCACGUGGUGAUGAAGAAAUCCAUAUGGUAUACAAGUGGGAUUGUGUAUGUAUGGAAAGAGGAGUCGAGUUUGGAAGGGAGUCCGAAUUCGGAAAGUUUGAUUGAGAUAAGGAAAGAGAUAAGAUGUUUACUUGCAAGAGAGGGUUUCCUACGUGGUUAGGAGUCCUAAGUUGUGUUAGAUUCGUGGGCUUUGCACAGCCUACCUCAUGUAUAAAUAGAGAGGGAGGGUGAGGCUUCCCGGUAUCGAGUUUAGAGAGACUAGAGUUGAGAGAAAGUUAGGGUUUCGAGUUUAGUUCGAGAUUUUGGUGAGGAGUGCUGUUGGUGCACUUUUUAAACACUAGUCGAGUGCUGUUGGUUUCGUUCGAGGGUAAUCUUUAAUUCCCCAAAAGAUUUUAGGUUUUUGGUUUUCCCUACCAUUCACCCCCCUCUGGUAGGUUUAUUUGGUCUUGUGUGAUCCUACAAUCUGAAGUAUUCAUUGGGCAAUUCAUAAAUACGCUGAUCAGAUGAACAGCGCAGAGAUGAGAGAUGUCAGGUUCAAUGAAAAUACAAAUACUAUGAUCAUUUAUUGUUUAAAAUAAUAACGGUGAAAACAUGCAAAUAGAUUAUUUAUAUUCUUUAGAGGAACAUCUUUUGUUAUCUGUAUUCUCUGCAGUAAAUAGAAUGAAAUGUACAAGCUUAUAUAUAUCUCUGUGGCUUAUGCAUCUAGUGAUGGAUUUAUUUGUGUAAUCUUGUGAGCAUUGCUAGUAGUUUCCUUUUUUGUUUUCUGCAUGUAACUAGCUGGCUGGCUUGUCUAGCAUUCGGUCAGCUCAACUAGUCGCUUUUCAGUGAGAUAAGACCGAGCUAGAAACCACGAUGUGGGAUGGCGCAUUAGUAAGAUCUGGCAUUUUAUUCGGUCACGUUUUGCAUGUAAUGAACUCCGUUGGAUGGAAGAGAAUAAAUAGAGAAAAACCGAAAAGCAGAAGAAGGUUGCACUGCACAAAUUUCUUGCUUUGUUCCUCUGUUUUUUCUCUAAAACUUCAGACUACUGUUUCUGUUUGACAAUCAUCAAAAUGAGAGAGUGUGAGCGAAUCUGUGAGAUUAAUCUUGUCGUUUUGCCGACAUCUAGGAACCUAACGAUUCAAAACAUACACUAGUACAGAUCCUUCUAUCUGUGAUGGCCUCUAACAUGCUUGGAAUUAGCGGCCGUCACAAGGAAGUCAUCUCAAUCGGGCCGAAAAAGCGCCUGAUUGAGAUAACUCAGGCCCGUCACGAAUGACACAUAUCAGUGACGGGCCGUAGUUUAGGCCCGAUUGAGAUAACAUUCCAUAUCUCAAUCGGGCCCCAAGUUGGCGCCCGUCACGGAUAAUGGAAUGUUAUCUCAAUCGGGCCUAAACUACAGCCCGUCACUGAUAUGUGUUAUCCGUGAUGGGCAUGAGUUUUAUGCCCAUCUAACAUGUCUGUGCGGUCAUAUCUCAACAACUAGGCCCGUCACAGACGACUCAUCAGUGACGGGAUCUAUACUAAUGCCCGAUUGAGAUGACUUAGUAUUUUUUUCAUUUUUCAUAUGAAAUGUUUAUAUUUGUGAGUUGACAUGUAGCAAAAUAAUUGACUGUAGUAUAAUAAUUCAUUUUAUUAGUCAAAAUAAUUUUUCGGGUAGUA
Sequence
(OSA-LNCN5815.2):
CUUGUAAAACUAAAAGAGCACAACUGCAUUCACAAGUAACAUGACAAGUAACAAGGUAACAAAUGUGCAUAAUUGUCAUAAGUAGAAGGAAUUUCUUUCUUAUCAAAAGUGAGAGAUUUUUCUUUAAAGGCAUUGAAGAUGCUUUUUGGAUUUGCUUCAUAAAACACCACAAACCAUUUGUUGUUUGCCAAUGAUUUUCAUCAAGGGGUGAGAUUGUAGAAUCAAGGAGUUGAUUUAGAUUUUGUGAUGAAAAUAUUGGUGGUUUGCUAAUGUUAAUUUGGAGAUCUUAUAAGAUGGUUGAUUUUGUGAAGUGUGCUGUUUCGGUUGACCCUGGCGGUCAGACCGGCUG
Sequence
(OSA-LNCN5815.3):
AAAAGUGAGAGAAUUUUCUUUAAAAAUUUUUGGCAUUGAAGAUGCUUUUUGGAUUUGCUUCACAAAACACCACAAACCAUUUGUUGUUUGCCAAUGAUUUUCAUCAAGGGGUGAGAUUGUAGAAUCAAGGAGUUGAUUUAGAUUUUGUGAUGAAAAUAUUGGUGGUUUGCUAAUGUUAAUUUAGAGAUUUUAUAAGAUGGUUGAUUUUGUGAAGUGUGCUGUUUCAGUUGACCCUGGCGGUCAGACCGGCUGAGUGCCCCGGUCAGACCGUAGGUGUUGCGGCGGUCAGACCGGCCGGCCCGAUGGUCUGACCGGCAGGAUCCUGAUCGAUGUCGGUUUCGGGUUCUUUUGUUGAAUUUGGAUAUUUCCUUCGGGGAUUUGGCUUCUAGAUGGUUUCUAUGCGUAAGGAUACUGUUGUUAUACUAAUGUGAGUCAAGUUGGGACGAACUUGGGCUCGGAAUAUGGUUUCUUGGUUGUUGCAUGUGCAGGUGUUGCUUGAGGCCUCAGGAGAGUGUUGCCGGUGAUAGAUCGGAGUCAGCUUGGGAGAAGUUGAUGUCCAGGGAUCAUGAGAUCAUGCGGGAUACUAAAGGCUAGAGGUCAAUGCACGUGGUGAUGAAGAAAUCCAUAUGGUAUACAAGUGGGAUUGUGUAUGUAUGGAAAGAGGAGUCGAGUUUGGAAGGGAGUCCGAAUUCGGAAAGUUUGAUUGAGAUAAGGAAAGAGAUAAGAUGUUUACUUGCAAGAGAGGGUUUCCUACGUGGUUAGGAGUCCUAAGUUGUGUUAGAUUCGUGGGCUUUGCACAGCCUACCUCAUGUAUAAAUAGAGAGGGAGGGUGAGGCUUCCCGGUAUCGAGUUUAGAGAGACUAGAGUUGAGAGAAAGUUAGGGUUUCGAGUUUAGUUCGAGAUUUUGGUGAGGAGUGCUGUUGGUGCACUUUUUAAACACUAGUCGAGUGCUGUUGGUUUCGUUCGAGGGUAAUCUUUAAUUCCCCAAAAGAUUUUAGGUUUUUGGUUUUCCCUACCAUUCACCCCCCUCUGGUAGGUUUAUUUGGUCUUGUGUGAUCCUACAAUCUGAAGUAUUCAUUGGGCAAUUCAUAAAUACGCUGAUCAGAUGAACAGCGCAGAGAUGAGAGAUGUCAGGUUCAAUGAAAAUACAAAUACUAUGAUCAUUUAUUGUUUAAAAUAAUAACGGUGAAAACAUGCAAAUAGAUUAUUUAUAUUCUUUAGAGGAACAUCUUUUGUUAUCUGUAUUCUCUGCAGUAAAUAGAAUGAAAUGUACAAGCUUAUAUAUAUCUCUGUGGCUUAUGCAUCUAGUGAUGGAUUUAUUUGUGUAAUCUUGUGAGCAUUGCUAGUAGUUUCCUUUUUUGUUUUCUGCAUGUAACUAGCUGGCUGGCUUGUCUAGCAUUCGGUCAGCUCAACUAGUCGCUUUUCAGUGAGAUAAGACCGAGCUAGAAACCACGAUGUGGGAUGGCGCAUUAGUAAGAUCUGGCAUUUUAUUCGGUCACGUUUUGCAUGUAAUGAACUCCGUUGGAUGGAAGAGAAUAAAUAGAGAAAAACCGAAAAGCAGAAGAAGGUUGCACUGCACAAAUUUCUUGCUUUGUUCCUCUGUUUUUUCUCUAAAACUUCAGACUACUGUUUCUGUUUGACAAUCAUCAAAAUGAGAGAGUGUGAGCGAAUCUGUGAGAUUAAUCUUGUCGUUUUGCCGACAUCUAGGAACCUAACGAUUCAAAACAUACACUAGUACAGAUCCUUCUAUCUGUGAUGGCCUCUAACAUGCUUGGAAUUAGCGGCCGUCACAAGGAAGUCAUCUCAAUCGGGCCGAAAAAGCGCCUGAUUGAGAUAACUCAGGCCCGUCACGAAUGACACAUAUCAGUGACGGGCCGUAGUUUAGGCCCGAUUGAGAUAACAUUCCAUAUCUCAAUCGGGCCCCAAGUUGGCGCCCGUCACGGAUAAUGGAAUGUUAUCUCAAUCGGGCCUAAACUACAGCCCGUCACUGAUAUGUGUUAUCCGUGAUGGGCAUGAGUUUUAUGCCCAUCUAACAUGUCUGUGCGGUCAUAUCUCAACAACUAGGCCCGUCACAGACGACUCAUCAGUGACGGGAUCUAUACUAAUGCCCGAUUGAGAUGACUUAGUAUUUUUUUCAUUUUUCAUAUGAAAUGUUUAUAUUUGUGAGUUGACAUGUAGCAAAAUAAUUGACUGUAGUAUAAUAAUUCAUUUUAUUAGUCAAAAUAAUUUUUCGGGUAGUA
Sequence
(OSA-LNCN5815.4):
GUUUGCCAAUGAUUUUCAUCAAGGGGUGAGAUUGUAGAAUCAAGGAGUUGAUUUAGAUUUUGUGAUGAAAAUAUUGGUGGUUUGCUAAUGUUAAUUUAGAGAUUUUAUAAGAUGGUUGAUUUUGUGAAGUGUGCUGUUUCAGUUGACCCUGGCGGUCAGACCGGCUGAGUGCCCCGGUCAGACCGUAGGUGUUGCGGCGGUCAGACCGGCCGGCCCAAUGGUCUGACCGGCAGGAUCCUGAUCGAUGUCGGUUUCGGGUUCUUUUGUUGAAUUUGGAUAUAUCCUUCGGGGAUUUGGCUUCUAGAUGGUUUCUAUGCGUAAGGAUACUGUUGUUAUACUAAUGUGAGUCAAGUUGGGACGAACUUGGGCUCGGAAUAUGGUUUCUUGGUUGUUGCAUGUGCAGGUGUUGCUUGAGGCCUCAGGAGAGUGUUGCCGGUGAUAGAUCGGAGUCAGCUUGGGAGAAGUUGAUGUCCAGGGAUCAUGAGAUCAUGCGGGAUACUAAAGGCUAGAGGUCAAUGCACGUGGUGAUGAAGAAAUCCAUAUGGUAUACAAGUGGGAUUGUGUAUGUAUGGAAAGAGGAGUCGAGUUUGGAAGGGAGUCCGAAUUCGGAAAGUUUGAUUGAGAUAAGGAAAGAGAUAAGAUGUUUACUUGCAAGAGAGGGUUUCCUACGUGGUUAGGAGUCCUAAGUUGUGUUAGAUUCGUGGGCUUUGCACAGCCUACCUCAUGUAUAAAUAGAGAGGGAGGGUGAGGCUUCCCGGUAUCGAGUUUAGAGAGACUAGAGUUGAGAGAAAGUUAGGGUUUCGAGUUUAGUUCGAGAUUUUGGUGAGGAGUGCUGUUGGUGCACUUUUUAAACACUAGUCGAGUGCUGUUGGUUUCGUUCGAGGGUAAUCUUUAAUUCCCCAAAAGAUUUUAGGUUUUUGGUUUUCCCUACCAUUCACCCCCCUCUGGUAGGUUUAUUUGGUCUUGUGUGAUCCUACAAUCUGAAGUAUUCAUUGGGCAAUUCAUAAAUACGCUGAUCAGAUGAACAGCGCAGAGAUGAGAGAUGUCAGGUUCAAUGAAAAUACAAAUACUAUGAUCAUUUAUUGUUUAAAAUAAUAACGGUGAAAACAUGCAAAUAGAUUAUUUAUAUUCUUUAGAGGAACAUCUUUUGUUAUCUGUAUUCUCUGCAGUAAAUAGAAUGAAAUGUACAAGCUUAUAUAUAUCUCUGUGGCUUAUGCAUCUAGUGAUGGAUUUAUUUGUGUAAUCUUGUGAGCAUUGCUAGUAGUUUCCUUUUUUGUUUUCUGCAUGUAACUAGCUGGCUGGCUUGUCUAGCAUUCGGUCAGCUCAACUAGUCGCUUUUCAGUGAGAUAAGACCGAGCUAGAAACCACGAUGUGGGAUGGCGCAUUAGUAAGAUCUGGCAUUUUAUUCGGUCACGUUUUGCAUGUAAUGAACUCCGUUGGAUGGAAGAGAAUAAAUAGAGAAAAACCGAAAAGCAGAAGAAGGUUGCACUGCACAAAUUUCUUGCUUUGUUCCUCUGUUUUUUCUCUAAAACUUCAGACUACUGUUUCUGUUUGACAAUCAUCAAAAUGAGAGAGUGUGAGCGAAUCUGUGAGAUUAAUCUUGUCGUUUUGCCGACAUCUAGGAACCUAACGAUUCAAAACAUACACUAGUACAGAUCCUUCUAUCUGUGAUGGCCUCUAACAUGCUUGGAAUUAGCGGCCGUCACAAGGAAGUCAUCUCAAUCGGGCCGAAAAAGCGCCUGAUUGAGAUAACUCAGGCCCGUCACGAAUGACACAUAUCAGUGACGGGCCGUAGUUUAGGCCCGAUUGAGAUAACAUUCCAUAUCUCAAUCGGGCCCCAAGUUGGCGCCCGUCACGGAUAAUGGAAUGUUAUCUCAAUCGGGCCUAAACUACAGCCCGUCACUGAUAUGUGUUAUCCGUGAUGGGCAUGAGUUUUAUGCCCAUCUAACAUGUCUGUGCGGUCAUAUCUCAACAACUAGGCCCGUCACAGACGACUCAUCAGUGACGGGAUCUAUACUAAUGCCCGAUUGAGAUGACUUAGUAUUUUUUUCAUUUUUCAUAUGAAAUGUUUAUAUUUGUGAGUUGACAUGUAGCAAAAUAAUUGACUGUAGUAUAAUAAUUCAUUUUAUUAGUCAAAAUAAUUUUUCGGGUAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.52%
ME_num:
MEP:
35.77%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.91
Avg Expression:
6.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.82584688867355 | 0.00182351908999634 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | -2.30265559363064 | 0.00208067501503206 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.53291639846404 | 6.72444936971994e-08 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.14740230444424 | 1.26994807089143e-05 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.72442500695836 | 0.000442189614028667 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.27281101909086 | 0.0258462916918776 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.16424024972244 | 0.0117688485953579 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.50096262040389 | 6.44735627580605e-09 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.7511858554098 | 0.00739836655553341 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.72048689213655 | 2.09929757633968e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.07469427833223 | 0.0278051591571674 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.53863392814518 | 0.00950522585182173 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.18852029865495 | 0.00490878777266769 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.19046489398068 | 0.0087791776206104 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.18865558243036 | 0.00495323576320321 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.18872908614621 | 0.00492424685032061 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.75357326818986 | 2.70555147627289e-39 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.91877329022757 | 0.000154981019551089 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.04772376539682 | 1.86212413926755e-11 |