Chr:
Chr6
Start:
14812389
End:
14814286
Strand:
+
Ref_name:
OSA-LNCN5814
Sequence
(OSA-LNCN5814.1):
CACAGCAUAUGCAUAGAUGAAAAGACUAAAAUACAACCCUGUCUCUGAAAUAAACAUGUAAUUUAAUGUGAGUAUUUCUGUGAGAAACAAUAUUUUUCAUCCCCAAAAAAAAUAGUAGUCUUCAAAUGACACUCUUGUCAAAAGGAGGGUAGUCAAAAGCCACAUAAAAGCAACAGUUGAAGAGCUCAUCCUAUAUGUAGGAGAAGAUCGGGAUUACAUAUGAGUUUCAAAUCAGGUAUGUGUGAGCCGUUUCUUCAUUUCUACCUAUCAUUGUCUUGUCAGUUUUAUCUGUCUAUCUAUAUAUCUAUACAUAUACUAAUCGUAUAUUCUAAAGAGAGCUACGACAUUAAGAAGAAAUAUCUGGUCAUCAAUAUAGGUGAAUUGUACUAUCGUAAAAGUAUAUCGUAUUGACAGUUUGUAUCAAAUAAAACAUGCAAAUGGAAAUUGUAGAAUCAAGGUAUUGAUGUAAUCUAUGCGAUGAAUAAUUGUUAAAUGUAAGUGUUUGUUGAAAAUACGGUGAUUGUUUUCGGAUGGUGAACAGUGCGGUGGUCGGCAUUGUGAAGCCGGUCACACCGGGCGGGUGUCGCCGGCCAGACCGGUGGUGUUGAUGAGGUCAGACCAGGUAGUCCGACGAUCGGACCGACAGACUCCAGGAGGGAGUCGGUUUCGUAGAAUUUCUAGAUUGCUUCAUGUUUAUGACUUCUAGAUGGUUUCUACACGUAUGUGAUACUAUUGUGUGAUGAUGUGAGUUAAGUUGGUGCGAACUUGUACUCAGAUAUAAAGUUUCUUCAUUGUUCAUGUGCAGAUGUUGCUUGAGACCAUGGGAGUAUAGCCAAUGAUGGAUGGGGACUAGGCUUAGGAGAAGUUGAGGUCCAGACGGUCAAGGAUAUCAUGUGGGAUGCUUAGUCUAGAGAACAAUGCAUGUGGAGGUGAAGGUUUCCAUAUGGCAUACACAUGACGUUGUGUGCGUAUGGAAAGAGGAGUCAAAUUUGGAUUGGAGUCCAAGUUUUGAAAGAUUGGAGUGUGGAGUUUUAUAGAGAUGUAGUUUCCCUGGCUAGGGAGUGUGGAGAUUGGAGUCCCAGUUCUAGUUGAAUUCGUGGCUAGGGGUAGCCACGUUGUGGGUAUAAAUAGAAGAGGGGUUGAAGCUAAAAGAUAUUAACUUAUUGGGAGAGAAAAGUUAGAGUUUGCUUUGAGAUUUCAAUCCUAGUUCGAGAGUUGAGAGAUGAGUGCUUUAGAUGCACUUUGUAAACACAUAUUGAUGCAAUAAAGUUGAUCUACUUUCCAGAGUUUCAUCAAUACAUGUUUUUCUGGAUCCCGACAAUUUGACCGAAGUUUAUUCGGCGGUAUAACCGGCAGCAGGAAGACAGUCCAACUGGCGGCAAGGAGACGGUCAGACCGGCGGUGUAACUUUGUCAAGUUUGAGGGUAACUUUUAUGUCUGCUAAAAGUUUAGGUUUUAAGUGUUCCUACCAUUCACCUCCCCCCCUCUGGUAGGCUUGGUUCUUGUAUUCGAUCCUACAGAAAUACUAUGGACUCUCUAGUUUUAAUUUUUUUCUCAAAAUUGAAAAUCACAAAAAUCUGGAAUUGAUAAUAAAUAUGAAAUUGUACUCGUCUUGAUUGUUUUUUAAUUAAUUGGGCUCUUUAGUUUUAGAUUUUCCAAUAUUAGUAACUCCGAAAUUCUAAAUUAAUAAAAAUGAAGUUGCAUUACGUGGAUCUCAUUCGUGAUCAUAGAUAGUGGAGAGUCCAUAUAAAAUAAAUCACAUAAUUGGAAAUAGCAUGGACUCUACUUUAAUAAUUCUGAAAUUCGUAAUUAUGAAUAUGAUAUCAUUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.15%
ME_num:
MEP:
88.62%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.57
Avg Expression:
3.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.85596552380414 | 1.18669774489692e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.07017033702061 | 0.00929574300778857 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.7159406943327 | 2.25592269704998e-19 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.48171803203445 | 0.00142907226818922 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.50893562920882 | 3.00172984836809e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.01623578515097 | 7.18139980210988e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.2292913736076 | 0.00179491071552427 |
| 8 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -1.49424170707528 | 0.0137632290424966 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.83900945584728 | 9.16699425779421e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.11968446206185 | 8.98973512326401e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.70417425837906 | 8.98517826125137e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.50885679440799 | 4.20514110180071e-06 |