OSA-LNCN5813


Function Link


Basic Info

Chr:

Chr6

Start:

14789814

End:

14791278

Strand:

.

Ref_name:

OSA-LNCN5813

Sequence
(OSA-LNCN5813.1):

UGCAUGUGCAUGGUUACAAGUUAACACAAGUCCUAAAAGUACUUCUCUUUGUCCAUACAAAGAUACAUACAUAGUAGCAAGUUUAAUAGAAGUAAACUUUUAGAAUUCUAAUCUUUAAACAAUAAUAUCUCUCACAUCGCAUAUUUUUUUUUAAGAACCGUUUUCACCAUAAUGCUAGAAAACGACUUUACAGCGAGAGAGUAGUCCUGUAAAUCUCAAUCUUUUAUCUUUAGAUAGGUAAGACUAUUCUACAAACCUCUAUAGUAUAACUAUUCUAAACCCCACCCUUCACCCCCACACGCCCUCCCUGCCCUCCCUCCCCUCCUCCCCGCGUCUCCUCCUGGCGCCCUCUCUUUCCGUUUUUUUUCCUCCCUCUCCUCUCUCCAUCCCUCCCGACGCCCUCCUCCCCUCCUUUUUUUUUCAUUUCUUUUUCACCCUUGUCCUCCCCUCUUGGGCUCCGGACGCCCUCCUCUCUUUCCGUUUUUUUAGCUCCAUCCCCUCUCUCUCCAUCCCUCCCGAUUAGGGGUGGAUAUCGAGCUAGCUCGGCUCGCGUCACCUCGUUAAGAUAGCAAGCUAGCUCGGCUAGGCUCGAUAAGCAAACGAGCUAAAACUGCAACUCUGGCUCGGCUCGUCGAAAAGCCCGAGCUAGCUCGUUUGGCUCGUGAGCUCAGCAUUGCUAGAUGAGUUGUGGAGUUUCGGGUAACAGGGAAGAUGGAUGCCAAAAUCAAAUCAAGAGCACCAUGAGAAAAGAAGCAUUCAAAUAUUCAAGAAUACAAGAUUGAAGGGACAGUAAUAGCAAGGUUGGUGUCGACGGCUUGAGUCAACGACGGCGGCACGGUGCUACUUGGUUUCAACCACUGCGGCACGACGCUGGUCGGAAUCGGCGACGGCGUUGCUUGGAUGCGACAGCGCGAUGUGGAAGGGGGAAGAGGAUGUGGCGGACAGGACGAGAAGCUUGCAAGUGGCGGCGUCGCCGGCACAUACGGAGGUCGCUGGUCACCUGAGCAAUUGACCCUGGCAGCAAGCGCUGGCGGCGUGGCCUUUGAUUUUUUUUCAUUUGGACGACUGCUUCGAUGGGAUAGGGAGGAUUGGAUGGGGACCUAGGUUUUGUUGGGUAUAUAUACACCCUCACGAAAUGGGCCUACAGUGUUGGGCUUUGUAUUUAUUUGGACUGGGCGGUAUAGCCCAUACUAGCGAGCACCUGUGACCACAAGCUAAGGUGAAAAGAAGGCAUGUGGCAUGUUGAAGCGUGGGCUACCCCAGCUCGUUAAGGAUCGUGAGCAGCUCACGGGCCAGCUUGAGCUGACUCGUUAUCUCUAACGAGCUAAAAUGCUAGCCUGGCUCGUUUGGAAAAUAAAACGAGUCGAGCCGAGCCGAGCCGAGCUUGUCACGAACCGAGCGAGCUAACGAGUUACGAGCUUUUUGUCCACCCCUACUUCCGAUGCCCUCCUCCCCUCCCUUUUUU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

280

LEP:

56.91%

ME_num:

206

MEP:

41.87%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.77

Avg Expression:

2.09

Tip: OSA-LNCN5813 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h2.162617831050530.000322933213982967
2Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day4.623729036766870.0142365304771711
3Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day4.446730513113710.0490483100593387