Chr:
Chr6
Start:
14004584
End:
14005922
Strand:
-
Ref_name:
OSA-LNCN5798
Sequence
(OSA-LNCN5798.1):
ACUAAAGAGCAGCACCCUUGAAAAAAAUCAUGCUCUUAAAAAUAUCUUCGCCCAUUUAAAAAUCGCCACCCACCAGUUGUUCCUCCUCCCUUCAGAUCCAUCUUCUCCUCCUCCCUCCUCCCUCCAGAUCCACCAGCACCCUCUCCUACUCCCUUCCAACAGGCAGCGGCGGUUGCUCCGGCGGCGUUUCUCGGGUGGCGGGGCGCGGCGCUCCAACAGCAGCGUGUGGCGGCGACGGCGACAGAACGUGUGGCGGCGACGGAAGGCGAGCGCGCCGCGGUGCACGGUCCCUCCGCCUCUCUCCCUCCUCCCUUCUCUCUCCACGGCCGCCAGCCUCCCUUCUCUCUCCACCGCCGCUAGCCUCCCUUCACUCCCCACCGCUGUGUGGGGAAGGAGGCGGCGGCGGGGGAAGGAGGUGCGGCAGUGGCACGGGGAAGAGGGUGGCGGCGGUUCUCAGCGGUGAGGUGCGGAUCUAGCUCCGGCGAGCCUUGGGAGGGCAGAUCCACCGCCACCGGUCCUUGGGAGUGGCACGGGGGAGGGGGCAGUUGCGGUGCUCAGCAGCACCGGCGUGUGGGAGGGGCAGUGGGGAGUAGAGCUGCGCAGGCGAGCCCCGGGAGAGCGGAUCCGCCGCCGGCCAUCCACGCCCUCCCUCGGGAGCAACAAAUCCAUCCUCGCCUCUUAAUCUUCGUGAUGUAAACUUUUUGUGCUCGAUCUUUGAUGUCUCACCUCUUAAUCUUUGUGAUGUAAAAUUUUUGUGCUUGAUCUGUGAUGUGGAACUUGUAGAAUUUGUGCUGCAAUGUGAAAUUUUUGUGUUAAUUUGUGGAUUUGGAAUCUGUGAUUGCAUUUUUGCGGAAUUUGUGCUUGUUGUGGAUUUGGGGUAUGAGAUUUGGGGAUGUGGAUUUGGGAAUGCAGGGUAGCAGCAUGUGGGUAUAUUCAUUUUUGCUGGCGGCUAGACGGCAGCUAUGUGGGUUUUUUUUUCCAAAAUCGAUUAUCUCUGGCGGCCAGUAUAACACAGCCGCCAGUAAAAAUGAAUUAUCGCUGGCUAUCGGUGUAAGACAACCGUCAGCCAAAAUGGAUCUUUGCUGGCGACUGGCUUAAGACGAUAGCCUUAUCGCUGGCGAUCGAUAAUCGUUAGCGAAGAUCUUGGUUUUCAUUGGCCUUUGCUUUGUGGUGGAAAACCUAAAAUGACCGCCAUGAAAGAUGGUUUUUUUUAGUAGUAGUGGAUAUUCAAUCAAGUGUAAGCUCGUAUUAGGUCUUAUAGCUAAUUACUAUCAUUAGCCAUAUCAUUGCCUAGUUGGAUUAAUUAGAUUAAUUUACUCUGAUUUGUUUGAGCCUUGAU
Sequence
(OSA-LNCN5798.2):
ACUAAAGAGCAGCACCCUUGAAAAAAAUCAUGCUCUUAAAAAUAUCUUCGCCCAUUUAAAAAUCGCCACCCACCAGUUGUUCCUCCUCCCUUCAGAUCCAUCUUCUCCUCCUCCCUCCUCCCUCCAGAUCCACCAGCACCCUCUCCUACUCCCUUCCAACAGGCAGCGGCGGUUGCUCCGGCGGCGUUUCUCGGGUGGCGGGGCGCGGCGCUCCAACAGCAGCGUGUGGCGGCGACGGCGACAGAACGUGUGGCGGCGACGGAAGGCGAGCGCGCCGCGGUGCACGGUCCCUCCGCCUCUCUCCCUCCUCCCUUCUCUCUCCACGGCCGCCAGCCUCCCUUCUCUCUCCACCGCCGCUAGCCUCCCUUCACUCCCCACCGCUGUGUGGGGAAGGAGGCGGCGGCGGGGGAAGGAGGUGCGGCAGUGGCACGGGGAAGAGGGUGGCGGCGGUUCUCAGCGGUGAGGUGCGGAUCUAGCUCCGGCGAGCCUUGGGAGGGCAGAUCCACCGCCACCGGUCCUUGGGAGUGCGGAUCCGCCGCCGGCCAUCCACGCCCUCCCUCGGGAGCAACAAAUCCAUCCUCGCCUCUUAAUCUUCGUGAUGUAAACUUUUUGUGCUCGAUCUUUGAUGUCUCACCUCUUAAUCUUUGUGAUGUAAAAUUUUUGUGCUUGAUCUGUGAUGUGGAACUUGUAGAAUUUGUGCUGCAAUGUGAAAUUUUUGUGUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.29%
ME_num:
MEP:
14.23%
HE_num:
HEP:
67.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.64
Avg Expression:
38.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.99270309274868 | 7.68318250156489e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.07558250608679 | 1.08238031895935e-21 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.92131119190438 | 2.7680899467214e-19 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.91802925428018 | 3.76619564954303e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.3908784753892 | 1.56542237319748e-09 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.00240618422267 | 0.0109604901807137 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.3131771628204 | 0.00436181065420124 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.12577803356046 | 0.0319173620141098 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.84465714085848 | 0.019770143294578 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.27680158143106 | 8.94247685292764e-09 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.82823514959646 | 8.17785150276471e-20 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.42051703364156 | 0.0125735822209579 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.27899907536395 | 0.00662890398490133 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.01016622990117 | 0.00547623110952251 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.44665450971207 | 0.00603579055779659 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.01007088660166 | 0.00556497018590429 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.00997501170027 | 0.00551629238832118 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.62807036732047 | 9.73139758418769e-18 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.34148759249356 | 1.81283610536528e-08 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.51173149538199 | 1.58630989803406e-14 |