OSA-LNCN5797


Function Link


Basic Info

Chr:

Chr6

Start:

14045562

End:

14047005

Strand:

+

Ref_name:

OSA-LNCN5797

Sequence
(OSA-LNCN5797.1):

GGGAAAUGGCAAAUGUAAUCUCACUACAAGAAAAAAAAACGAUUUUUCACUGCGAGGCUUAUAAAUUUUACAACGGACCAUAUUUUUAGCUGCGAUUAUCUGCUUGCGAAAUUAUGUAGAGGGACCCGAUUUUUCCCCACCUACGAAAAUGAAUUUUUCCAGACGGACGAUUUAAAGGAGCUGUCUACGAUAAUAUUUUUACUUUUGUUGGCAGACCUUUUAAAAGGUCCGCCUCCAAAAUUUAAUUUUCGCAUACGAACCACUAAGACCACCGUCUGCAAAAACCACGACCGAACAACACAUAGAAAAAUAAAUUCCCACAUCUGUUCUUAUCACCAUGUCUCCACAACCACUCCAUAUCUAACCUUAUACCUCCCUCUCUGUCUCACAAUCAAACCCUCUCCCUCUCCCUCUCCCUCUCCUCAGAGCUUACAAGGAGGAGGAGGGCAGUCGGUGGCUCGGCGAGGAGGUGCCGGCGGCGGUAGCGGCUCGAUGAGGAGGAGGGCCGGCGGUGGCAGCGGCUCAGUAAGCCGGGAGGAGAGCCAACGAGGAGGAGGGCCGGCAGCGAGAACGGCUCGGCGAGGAGGAUGCGGAGGGCCCAUGGAGGCAGCGGCGCGGCGAGGAGGACGAGGGCCACGACGGGGGAUUCUCGACUCAGCGAGGAGAAGCGGCGAUGGCUCGGCGAGGAGCAGCGGCAGUGGCUCGACCGGCGAGGAUGGCCAGCGAUGAGGAGGAGGGCCGGCGGCAGAUCGACUCUUCCCCUCCCCUCCAAUCCCGUUGGCGACGGUGGCUCUAUGACGAGGAAGAAGGGCGGCGGCUUGGUAGAGACAGCGACGAACACUGCACGCAGUAAGGGUGACGUACGGUGACGGCGAUCAUACGGGGAGGGCGUACAUUGUCAGCAGUCUCUAGAUAUCCUCCGUUGUUUUUCUUCCUCUAAAUCCAUAUCCAUAAUUCAUUUUCUUUUCUCUUUAUUUCUGUGGAAUAUGUGAAUCUUGUUCUUCUUAGUUGUAUGGUGAUGUUUUAUAUGUGAAUUUUGUUCUUCUCAUUUGUGUAGUGACAUUUGAUUUUAUUUGCAUUGUGCUUAAUCUGUGGAAAUGGUAGCUGAAUCGGGAUAUUUUCAAAUGUAUUUUAAUUUUUUUUAUCCAAAUUUUUCUUCCUAGGUGGUCUGUUUUAGGUGCCUGCCUAAGAAAAUGUGAUUUUUGCAGGUGGACCGCUUAACGGAGCUGCCGCCGAAAAUGCUUUCAAAGGCCUUUAGGUGCAUGUGGAGGUUUUGGCCACCUGCAAAAAUAUGUUUUCCAGCACAAUGAAGUAUUGUCAAUAUUAACCAAUUUUAUUGCCCAAAAGAUAUAAUUUUAUAAAAUGGUAUAUAUCUGAAGAAAUUCCAAGUGCUGAAAUAUCCUUUGUCCGAAUGCACAAUACAUAUGGAAAUCAAAGCAUUGCA

Sequence
(OSA-LNCN5797.2):

AACCUUAUACCUCCCUCUCUGUCUCACAAUCAAACCCUCUCCCUCUCCCUCUCCCUCUCCUCAGAGCUUACAAGGAGGAGGAGGGCAGUCGGUGGCUCGGCGAGGAGGUGCCGGCGGCGGUAGCGGCUCGAUGAGGAGGAGGGCCGGCGGUGGCAGCGGCUCAGUAAGCCGGGAGGAGAGCCAACGAGGAGGAGGGCCGGCAGCGAGAACGGCUCGGCGAGGAGGAUGCGGAGGGCCCAUGGAGGCAGCGGCGCGGCGAGGAGGACGAGGGCCACGACGGGGGAUUCUCGACUCAGCGAGGAGAAGCGGCGAUGGCUCGGCGAGGAGCAGCGGCAGUGGCUCGACCGGCGAGGAUGGCCAGCGAUGAGGAGGAGGGCCGGCGGCAGAUCGACUCUUCCCCUCCCCUCCAAUCCCGUUGGCGACGGUGGCUCUAUGACGAGGAAGAAGGGCGGCGGCUUGGUAGAGACAGCGACGAACACUGCACGCAGUGGACCGCUUAACGGAGCUGCCGCCGAAAAUGCUUUCAAAGGCCUUUAGGUGCAUGUGGAGGUUUUGGCCACCUGCAAAAAUAUGUUUUCCAGCACAAUGAAGUAUUGUCAAUAUUAACCAAUUUUAUUGCCCAAAAGAUAUAAUUUUAUAAAAUGGUAUAUAUCUGAAGAAAUUCCAAGUGCUGAAAUAUCCUUUGUCCGAAUGCACAAUACAUAUGGAAAUCAAAGCAUUGCA

Sequence
(OSA-LNCN5797.3):

CGGCUCAGUAAGCCGGGAGGAGAGCCAACGAGGAGGAGGGCCGGCAGCGAGAACGGCUCGGCGAGGAGGAUGCGGAGGGCCCAUGGAGGCAGCGGCGCGGCGAGGAGGACGAGGGCCACGACGGGGGAUUCUCGACUCAGCGAGGAGAAGCGGCGAUGGCUCGGCGAGGAGCAGCGGCAGUGGCUCGACCGGCGAGGAUGGCCAGCGAUGAGGAGGAGGGCCGGCGGCAGAUCGACUCUUCCCCUCCCCUCCAAUCCCGUUGGCGACGGUGGCUCUAUGACGAGGAAGAAGGGCGGCGGCUUGGUAGAGACAGCGACGAACACUGCACGCAGUAAGGGUGACGUACGGUGACGGCGAUCAUACGGGGAGGGCGUGGACCGCUUAACGGAGCUGCCGCCGAAAAUGCUUUCAAAGGCCUUUAGGUGCAUGUGGAGGUUUUGGCCACCUGCAAAAAUAUGUUUUCCAGCACAAUGAAGUAUUGUCAAUAUUAACCAAUUUUAUUGCCCAAAAGAUAUAAUUUUAUAAAAUGGUAUAUAUCUGAAGAAAUUCCAAGUGCUGAAAUAUCCUUUGUCCGAAUGCACAAUACAUAUGGAAAUCAAAGCAUUGCA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

399

LEP:

81.1%

ME_num:

81

MEP:

16.46%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.88

Avg Expression:

1.39

Tip: OSA-LNCN5797 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dusk-2.399266766434340.0294457135404125
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"-6.158631081473850.00875337450752292
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-2.99427838412890.0227084223874466
4Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae2.399164966385730.000429190208399894
5Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-2.517102117773130.00458338894187995