Chr:
Chr6
Start:
14045562
End:
14047005
Strand:
+
Ref_name:
OSA-LNCN5797
Sequence
(OSA-LNCN5797.1):
GGGAAAUGGCAAAUGUAAUCUCACUACAAGAAAAAAAAACGAUUUUUCACUGCGAGGCUUAUAAAUUUUACAACGGACCAUAUUUUUAGCUGCGAUUAUCUGCUUGCGAAAUUAUGUAGAGGGACCCGAUUUUUCCCCACCUACGAAAAUGAAUUUUUCCAGACGGACGAUUUAAAGGAGCUGUCUACGAUAAUAUUUUUACUUUUGUUGGCAGACCUUUUAAAAGGUCCGCCUCCAAAAUUUAAUUUUCGCAUACGAACCACUAAGACCACCGUCUGCAAAAACCACGACCGAACAACACAUAGAAAAAUAAAUUCCCACAUCUGUUCUUAUCACCAUGUCUCCACAACCACUCCAUAUCUAACCUUAUACCUCCCUCUCUGUCUCACAAUCAAACCCUCUCCCUCUCCCUCUCCCUCUCCUCAGAGCUUACAAGGAGGAGGAGGGCAGUCGGUGGCUCGGCGAGGAGGUGCCGGCGGCGGUAGCGGCUCGAUGAGGAGGAGGGCCGGCGGUGGCAGCGGCUCAGUAAGCCGGGAGGAGAGCCAACGAGGAGGAGGGCCGGCAGCGAGAACGGCUCGGCGAGGAGGAUGCGGAGGGCCCAUGGAGGCAGCGGCGCGGCGAGGAGGACGAGGGCCACGACGGGGGAUUCUCGACUCAGCGAGGAGAAGCGGCGAUGGCUCGGCGAGGAGCAGCGGCAGUGGCUCGACCGGCGAGGAUGGCCAGCGAUGAGGAGGAGGGCCGGCGGCAGAUCGACUCUUCCCCUCCCCUCCAAUCCCGUUGGCGACGGUGGCUCUAUGACGAGGAAGAAGGGCGGCGGCUUGGUAGAGACAGCGACGAACACUGCACGCAGUAAGGGUGACGUACGGUGACGGCGAUCAUACGGGGAGGGCGUACAUUGUCAGCAGUCUCUAGAUAUCCUCCGUUGUUUUUCUUCCUCUAAAUCCAUAUCCAUAAUUCAUUUUCUUUUCUCUUUAUUUCUGUGGAAUAUGUGAAUCUUGUUCUUCUUAGUUGUAUGGUGAUGUUUUAUAUGUGAAUUUUGUUCUUCUCAUUUGUGUAGUGACAUUUGAUUUUAUUUGCAUUGUGCUUAAUCUGUGGAAAUGGUAGCUGAAUCGGGAUAUUUUCAAAUGUAUUUUAAUUUUUUUUAUCCAAAUUUUUCUUCCUAGGUGGUCUGUUUUAGGUGCCUGCCUAAGAAAAUGUGAUUUUUGCAGGUGGACCGCUUAACGGAGCUGCCGCCGAAAAUGCUUUCAAAGGCCUUUAGGUGCAUGUGGAGGUUUUGGCCACCUGCAAAAAUAUGUUUUCCAGCACAAUGAAGUAUUGUCAAUAUUAACCAAUUUUAUUGCCCAAAAGAUAUAAUUUUAUAAAAUGGUAUAUAUCUGAAGAAAUUCCAAGUGCUGAAAUAUCCUUUGUCCGAAUGCACAAUACAUAUGGAAAUCAAAGCAUUGCA
Sequence
(OSA-LNCN5797.2):
AACCUUAUACCUCCCUCUCUGUCUCACAAUCAAACCCUCUCCCUCUCCCUCUCCCUCUCCUCAGAGCUUACAAGGAGGAGGAGGGCAGUCGGUGGCUCGGCGAGGAGGUGCCGGCGGCGGUAGCGGCUCGAUGAGGAGGAGGGCCGGCGGUGGCAGCGGCUCAGUAAGCCGGGAGGAGAGCCAACGAGGAGGAGGGCCGGCAGCGAGAACGGCUCGGCGAGGAGGAUGCGGAGGGCCCAUGGAGGCAGCGGCGCGGCGAGGAGGACGAGGGCCACGACGGGGGAUUCUCGACUCAGCGAGGAGAAGCGGCGAUGGCUCGGCGAGGAGCAGCGGCAGUGGCUCGACCGGCGAGGAUGGCCAGCGAUGAGGAGGAGGGCCGGCGGCAGAUCGACUCUUCCCCUCCCCUCCAAUCCCGUUGGCGACGGUGGCUCUAUGACGAGGAAGAAGGGCGGCGGCUUGGUAGAGACAGCGACGAACACUGCACGCAGUGGACCGCUUAACGGAGCUGCCGCCGAAAAUGCUUUCAAAGGCCUUUAGGUGCAUGUGGAGGUUUUGGCCACCUGCAAAAAUAUGUUUUCCAGCACAAUGAAGUAUUGUCAAUAUUAACCAAUUUUAUUGCCCAAAAGAUAUAAUUUUAUAAAAUGGUAUAUAUCUGAAGAAAUUCCAAGUGCUGAAAUAUCCUUUGUCCGAAUGCACAAUACAUAUGGAAAUCAAAGCAUUGCA
Sequence
(OSA-LNCN5797.3):
CGGCUCAGUAAGCCGGGAGGAGAGCCAACGAGGAGGAGGGCCGGCAGCGAGAACGGCUCGGCGAGGAGGAUGCGGAGGGCCCAUGGAGGCAGCGGCGCGGCGAGGAGGACGAGGGCCACGACGGGGGAUUCUCGACUCAGCGAGGAGAAGCGGCGAUGGCUCGGCGAGGAGCAGCGGCAGUGGCUCGACCGGCGAGGAUGGCCAGCGAUGAGGAGGAGGGCCGGCGGCAGAUCGACUCUUCCCCUCCCCUCCAAUCCCGUUGGCGACGGUGGCUCUAUGACGAGGAAGAAGGGCGGCGGCUUGGUAGAGACAGCGACGAACACUGCACGCAGUAAGGGUGACGUACGGUGACGGCGAUCAUACGGGGAGGGCGUGGACCGCUUAACGGAGCUGCCGCCGAAAAUGCUUUCAAAGGCCUUUAGGUGCAUGUGGAGGUUUUGGCCACCUGCAAAAAUAUGUUUUCCAGCACAAUGAAGUAUUGUCAAUAUUAACCAAUUUUAUUGCCCAAAAGAUAUAAUUUUAUAAAAUGGUAUAUAUCUGAAGAAAUUCCAAGUGCUGAAAUAUCCUUUGUCCGAAUGCACAAUACAUAUGGAAAUCAAAGCAUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.1%
ME_num:
MEP:
16.46%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
1.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.39926676643434 | 0.0294457135404125 |
2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -6.15863108147385 | 0.00875337450752292 |
3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.9942783841289 | 0.0227084223874466 |
4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.39916496638573 | 0.000429190208399894 |
5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.51710211777313 | 0.00458338894187995 |