Chr:
Chr6
Start:
12397401
End:
12403327
Strand:
+
Ref_name:
OSA-LNCN5774
Sequence
(OSA-LNCN5774.1):
CCUCCCUGUCGCUACAGUAUCGUCUUCAACCUCUGGCAGCCGACCUGAGACCGAAUUGGCUCGGUUUUUCCCCUCCAAAUCCGACCUUUUCUCUUGUGUUUUCCUAAAAUUAUUUGAGGGAAAUUAUCUCCUCCUUAUCCUCUUUCUUUCCCCUAAAGUUUCAGAGAUCAAUUUUGCCCGGAUAACGUUUUCGAGUUUAUCUCUCCACCUAACCCUCGAUUUUUCCGGCUCAAAUCCUUUCGUUUUGAGUUCGAUCUCUCUCACCCAUGCCUAUAUAAAGCAUCCCCUAGUCGUCCUCUUCCGUUUGCCCCCAAGUCCCGAGCUCUACCGUUGCCCUUAGCGCCGCCACCGCGUAGCCCUAGCCGCCGCCGUCGUUGUCGCCGCGCCGCGCCGCUGCUGUGGUCGUCGCCGCCGCCUUCCGUCGCCACCGUCGGGUUCGUGAGGAGGAGGAGCACCCCGGCCGCCCCUUUGCAGCCGCCGAAGACCGCCGGAGCGCCGCCGUCGACGUUGAGCCAAACCGUGCCGCCUUGGGACCUCGUCGCCGGCCGUCGUUUGUCGUCGUUCGUCGUUGUUCUUUGCACCGGUGAGUUCGCGUCGUCGUCCUCUUCGUGUUGGUGUCUUCGGAUAGCCCAACCGAGCUCUCUAUCGCCGGCGGAGUUGUGGUCCAGUGCCAUGGCUGCGAUGAUGUCAUCGUGACAUCAUAAAUCUUUUUUUAGUUUUUCUGUAUUAGAUGAAAUCUGAUUAAAUUUCGGAAAUUCAUAACUAAAUCAUCGUAACUCGGAUUCAAGUGGUUCAAGUUGCUAAAUUCAUGUAAAAUCGAGAUCUACAUGUUAAAAAUAUCCACAUGUACUGCUUAUACUUAUUUUUGUACUGUUUUGUUGAUUUUAUUUAUUUGUUUUAGUUUCCGACGUUCUGGAGGAGAGCGUUUACGUUAAGAAAGGUUUAGAAGCGUUUGAGGAAGCUCAAGUUGAAGAAAAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUAUUUUGGUGGACAAAAUCUUUACCACUCUGGUGGAAACGAUACUACAGUUCUCAUCGCAGAAACGGAAAGGACGCUACGGUGUCGAGCGUAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.01%
ME_num:
MEP:
53.46%
HE_num:
HEP:
8.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.78
Avg Expression:
3.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.20342165910583 | 3.4259217717385e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.40859940272077 | 0.00118797088900261 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.14902992541311 | 4.76292336540381e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.34088242592473 | 0.0092060840855541 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.93229875132339 | 0.00216678028874754 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.79595838115034 | 0.0141209312585755 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.00233385139237 | 3.40696354798231e-05 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.99858096483118 | 4.30055162946718e-05 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.41431317064458 | 1.02728542043174e-07 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.58110978334697 | 0.00130979194208601 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.86177050963668 | 0.000212441925071719 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.17687827338807 | 1.42300269368769e-06 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.77765564960556 | 0.000649864576891566 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.67836379460921 | 3.44452378465186e-13 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.58152510525149 | 0.000536142934666483 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.0289689505385 | 0.00222873542876832 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.85595005830626 | 3.44216278439903e-06 |