Chr:
Chr6
Start:
12339102
End:
12339985
Strand:
-
Ref_name:
OSA-LNCN5772
Sequence
(OSA-LNCN5772.1):
AUUAUUAGAAUUUGGGUGAGAAUCUGAACUGUUUUAGGAGCUUCCUUCGUCUCUCAAAGUCUCGAGGAACUUCUCAGGCGAAAAAAUUAUCCCCUCCUUUCCGGCCCCUUCCCUUCCAUCCCCGGCGGCUUCCCAGCCGUCGGCAAGGGGGUAGGGGGGGGGGGGUGGGAGGGGGUCUAGUUCCUUCCUUCACUAGUAAGCUUAGGUUUAGACUUCUCGGGUAUCUCCCGUUGUUGGGUUAAUCCCUUUUUGUACAGCUCGAAGGGGUCGUCGGCGUCCGGCUCCUUCGUCUUGGUUGCUUCUGCCAUGGAUGUCCUCGUCGGCUUUUUCUCCGGUGAAGAUUCCCUAUCAAUCAUUUUCCAGGUUCACCAUUAACGCCCGAAGCUAAGAGCACGAUGGGUUUGCCCAAAAGAAGGUAGCGCUGGCCACUUGCUUCUUCUCCGGCGAGCUUUCUGCAUCUAUGUUGGUCUUCUUACUCGUCUUUGGCGUUAGCUUUACAAGGUGCGGCUGAUGUGUUUCUCCGUUUGCCUUAGAUGCUUCAACCUCCAUAGAGAGGCCCCUUUUGGGUUCACAUCCAGGCAUCAUUAUAUGCAGCUAGCCAUGGAUUAUCAGCUCCUGUCGUCGUUCAAUGCGUCGAUCUGGCCUUCGUUGUUGUGGACAUGGCAAAGAGAAGGACCCGAUUGCUUUUUCUGUUUCUUUCUAGGUCCUUCCUUGCAUAUUUCAGGGUUAAAAUGUAAUUUGGCCAUCUGUCAGGGGUCUCCCUGUAAGACUUGCUGUACUCUCAACUUGCUUAAUAAAUUUCUAAUCUGAGGCUGUAGCCUCAGUUUGUUCUAAAAAAAGAUCUGUUUUAGAAAGUUUCUAGCUUCUAGUUAGCUACUACCACC
Sequence
(OSA-LNCN5772.2):
AUUAUUAGAAUUUGGGUGAGAAUCUGAACUGUUUUAGGAGCUUCCUUCGUCUCUCAAAGUCUCGAGGAACUUCUCAGGCGAAAAAAUUAUCCCCUCCUUUCCGGCCCCUUCCCUUCCAUCCCCGGCGGCUUCCCAGCCGUCGGCAAGGGGGUAGGGGGGGGGGGGUGGGAGGGGGUCUAGUUCCUUCCUUCACUAGUAAGCUUAGGUUUAGACUUCUCGGGUAUCUCCCGUUGUUGGGUUAAUCCCUUUUUGUACAGCUCGAAGGGGUCGUCGGCGUCCGGCUCCUUCGUCUUGGUUGCUUCUGCCAUGGAUGUCCUCGUCGGCUUUUUCUCCGGUGAAGAUUCCCUAUCAAUCAUUUUCCAGGUUCACCAUUAACGCCCGAAGCUAAGAGCACGAUGGGUUUGCCCAAAAGAAGCUUUACAAGGUGCGGCUGAUGUGUUUCUCCGUUUGCCUUAGAUGCUUCAACCUCCAUAGAGAGGCCCCUUUUGGGUUCACAUCCAGGCAUCAUUAUAUGCAGCUAGCCAUGGAUUAUCAGCUCCUGUCGUCGUUCAAUGCGUCGAUCUGGCCUUCGUUGUUGUGGACAUGGCAAAGAGAAGGACCCGAUUGCUUUUUCUGUUUCUUUCUAGGUCCUUCCUUGCAUAUUUCAGGGUUAAAAUGUAAUUUGGCCAUCUGUCAGGGGUCUCCCUGUAAGACUUGCUGUACUCUCAACUUGCUUAAUAAAUUUCUAAUCUGAGGCUGUAGCCUCAGUUUGUUCUAAAAAAAGAUCUGUUUUAG
Sequence
(OSA-LNCN5772.3):
AUUAUUAGAAUUUGGGUGAGAAUCUGAACUGUUUUAGGAGCUUCCUUCGUCUCUCAAAGUCUCGAGGAACUUCUCAGGCGAAAAAAUUAUCCCCUCCUUUCCGGCCCCUUCCCUUCCAUCCCCGGCGGCUUCCCAGCCGUCGGCAAGGGGGUAGGGGGGGGGGGGUGGGAGGGGGUCUAGUUCCUUCCUUCACUAGUAAGCUUAGGUUUAGACUUCUCGGGUAUCUCCCGUUGUUGGGUUAAUCCCUUUUUGUACAGCUCGAAGGGGUCGUCGGCGUCCGGCUCCUUCGUCUUGGUUGCUUCUGCCAUGGAUGUCCUCGUCGGCUUUUUCUCCGGUGAAGAUUCCCUAUCAAUCAUUUUCCAGGUUCACCAUUAACGCCCGAAGCUAAGAGCACGAUGGGUUUGCCCAAAAGAAGAUGCUUCAACCUCCAUAGAGAGGCCCCUUUUGGGUUCACAUCCAGGCAUCAUUAUAUGCAGCUAGCCAUGGAUUAUCAGCUCCUGUCGUCGUUCAAUGCGUCGAUCUGGCCUUCGUUGUUGUGGACAUGGCAAAGAGAAGGACCCGAUUGCUUUUUCUGUUUCUUUCUAGGUCCUUCCUUGCAUAUUUCAGGGUUAAAAUGUAAUUUGGCCAUCUGUCAGGGGUCUCCCUGUAAGACUUGCUGUACUCUCAACUUGCUUAAUAAAUUUCUAAUCUGAGGCUGUAGCCUCAGUUUGUUCUAAAAAAAGAUCUGUUUUAG
Sequence
(OSA-LNCN5772.4):
AUUAUUAGAAUUUGGGUGAGAAUCUGAACUGUUUUAGGAGCUUCCUUCGUCUCUCAAAGUCUCGAGGAACUUCUCAGGCGAAAAAAUUAUCCCCUCCUUUCCGGCCCCUUCCCUUCCAUCCCCGGCGGCUUCCCAGCCGUCGGCAAGGGGGUAGGGGGGGGGGGGUGGGAGGGGGUCUAGUUCCUUCCUUCACUAGUAAGCUUAGGUUUAGACUUCUCGGGUAUCUCCCGUUGUUGGGUUAAUCCCUUUUUGUACAGCUCGAAGGGGUCGUCGGCGUCCGGCUCCUUCGUCUUGGUUGCUUCUGCCAUGGAUGUCCUCGUCGGCUUUUUCUCCGGUGAAGAUUCCCUAUCAAUCAUUUUCCAGGUUCACCAUUAACGCCCGAAGCUAAGAGCACGAUGGGUUUGCCCAAAAGAAGGUAGCGCUGGCCACUUGCUUCUUCUCCGGCGAGCUUUCUGCAUCUAUGUUGGUCUUCUUACUCGUCUUUGGCGUUAGCUUUACAAGCUAGCCAUGGAUUAUCAGCUCCUGUCGUCGUUCAAUGCGUCGAUCUGGCCUUCGUUGUUGUGGACAUGGCAAAGAGAAGGACCCGAUUGCUUUUUCUGUUUCUUUCUAGGUCCUUCCUUGCAUAUUUCAGGGUUAAAAUGUAAUUUGGCCAUCUGUCAGGGGUCUCCCUGUAAGACUUGCUGUACUCUCAACUUGCUUAAUAAAUUUCUAAUCUGAGGCUGUAGCCUCAGUUUGUUCUAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.9%
ME_num:
MEP:
2.24%
HE_num:
HEP:
78.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.72
Avg Expression:
132.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.57970542100598 | 1.73190837978482e-42 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.20308335300884 | 3.23891708935871e-39 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.06474290992738 | 1.23870903329169e-33 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.22294871022656 | 3.34824482638644e-24 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.31897467205842 | 2.89601489886842e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.177346958181 | 2.03670393392485e-18 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.70218931306613 | 2.42123492716673e-91 |