Chr:
Chr6
Start:
12074882
End:
12079752
Strand:
-
Ref_name:
OSA-LNCN5770
Sequence
(OSA-LNCN5770.1):
AGGCAUGGACUCCCCAGCGACCCCCAUGGACUUCUCGCCACUUCUCAGUCUGGCGCACUAUAAUGAAUCACGCUAUACAAAAGAUAAAGCCGUUGCCCAUGCUGGCUUGUGGUUGGCACGAUAAAUGUUUCACAACAGUAGCUCGCGAACCGGUCCUUAAUUGCCAUGAGCACGACCUUCAAAACCAUGUGCUCACAACCCACCAUUAAUCAUAUUUUAAAUACCAAUUAAUUAUCAUAACACGAUUAACCAUCGUGAGCUACCAUUAAAUAUAACCAUAAAUAAUAAUGUAGUAUAUAUGAUUCAUCCCAUUAGUGAGCUAAUGUUUCUAAGCAUUGCUAAGCAAUUAUAUAUAUAUAACAUUUAGCUGAACCAAACCAAUACAUAAGGUUCAAGCUAAUCAAUUUAUUACCCAAGGUAUCAAGGAAUAGGAUAUUCAAUGCAAAUUGGCCAUAACAAAGGAAUUGGUUCACACCACCCGGUGACAUUCGAAAAUAAAUGCACAGUUGAAAUAAAUAGAGAAUUUAAAUAUAGGAUCAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
55.49%
ME_num:
MEP:
42.07%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.71
Avg Expression:
2.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.22698826363038 | 1.87509969609737e-05 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.5174036323306 | 0.00695908425027405 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.94632511531146 | 0.0244646192621234 |
| 4 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 5.9662163522161 | 5.87726340767374e-05 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.72189035524513 | 0.0003616998437755 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.63735720724168 | 0.0124036374235792 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.67641980914412 | 0.0133924126113785 |