Chr:
Chr6
Start:
11718145
End:
11723119
Strand:
-
Ref_name:
OSA-LNCN5764
Sequence
(OSA-LNCN5764.1):
CUAAUGUCAAAAAUAAUUAUGUUACAUAACAUAUGUACAAGGUCCCAAGUUUAAAACAUGAAACGUUUUCGUAUAUUAAUAUAGUAAAUGUGUGCACUUUAUCAUCUUAUCGCGUGAUGUAUUUUCAUCGGUACGACUAAGUGAGCAAUACGCUUGAUUGUCAAGACCGUGUUAAGAAUACUAACAUCACAACAUAACUACAUGCAAGAAUAUUUUAAAAGCAUCAAGAGGCCCCACAUGUUAUAGAGGCCAAUACCAAUCAUGAUUCUUAUGUUCUUUUAUCAAACCUAUGCUUUAAACCAUAUGUUAGUUUUAAGAACCAUUUGAAUUACCAUAGUCCAUUUUAAAUAUAUAAAAAUGAGUUUAAUAUUGAAUAUAUUCAUACCUUUAAAACUACCCCUCAUCCUCUUGCAUCUACGCGUUUGCACCGCAUGUCACGCCACCUGCACGAGCCCAGCCUAGAUAGGGAGAGAAGCUCAACUUGAGCCUUUUUUAGGGCCUAGCUAUAGAGGCCAUUUCUCACAUGAGGUUCUAGGCCCCAAUGGUUGUGCAGGCAACCAAACAACCUCCUUAGGUAUCCGCACAUGCGAGCAAUCUUCCAACUAACCAAACACGCCCUAUGCCCUAUGCCUCCCAAGCCAAUUUAUAUUAUAUUGAAAGAUGAUUCAAUAUAAUUAUGCUAUUGUUUCCUUAUAUCUCUCUUGCAAUAUUUUCGUACCGGAAUAGAUCCAGUUGAUCGGUAUUCGGUCCUACUAGUUCUUCCUGCUAUGUACUUAUGUUUUUUUUAAUAAUUUGUCUCUUCCCAGUUACAACUAACACCAAUUAUUGUUAUACAUUGCAUUUUUGCACUAAAGGCAAAUACUUUACUGCAGUACGUACAAACCUCCGACUUCUUUUACGGUACAAUAUAUAUGCUGGUAGUAUAAUGUCAAUUUAGAAAUUUAUCACAAAAUUUUAAAAAUGGUACUUUAGUACUUUCGUGCGCUUAGUCCUUCCAUUGUAAUGGUUGGUGGCGGCGUACGUGAACUCAUGAUGGCUAGCAGCGCCUUGCCGUGGUGAAGGAUAACAAGAAUAAGGAAUGGGAUUGAGAGGAGAAAAUAUACAGAAUUGCCAUCACCAAAUACUAGCAUGGAAAGAUAAUUUUACCUGUACAUUUACAUCAGGAGACAAAUUAAUUAAUCCUAAUACCGAUUACACUACUACGAGAAAGAUUUUUGCGUGCGGUCAAAAUCAGUUUUCGCGUGCGAGUGGGUGGCCCGCACGCACCCAGGGGUAUGAAAAAUCACGAUUUUUGGCACCUGCACACGAAAGUCGGAUUUUCGCGUGCGGGUGCUUAUAUCGCCCACACGGAAAAACAAAAAUCUGAAAAAAUUCAAAAAAGUUGAAAGUCCUAGAAUCGGCAGCGCCAACGCCGCUCCCAGCCGCUGCCUCCUCCUCGUCGGCCGACGACGUCGCUCCCGCCCUCGUUGUCAUCGUCAGCCGAGGAUGCUGCUCCCACCCUCGUCGUCAUCAGCGGCUGCCUCCGCGACACCCACCACCCGAUCCGUGCUCCCGCCGGCCUCCAUGCCGGCCACCGCCCGAUCCGCGCUCCCCUCCGGCCGCACCGCCGCCAACGCCCCUCCCCUCCGCCGGAUCUAGGAGGGAAGGAAGGGGAGGGGAGGGGAGCUAGAUCCCGCGUGGGGGGAGGGCGGCUGCCCGCCGGAUCCGUGCGGGGGUUGGCCGCCGCCCGCUGGAUCCCGCGCCUCGGCCGCCGCCGCGUGGAGGAGGCCGCCGCGCGCCAUCGCCUACACCCACCGCCGCCGCGUUGCCACUGUCGUCGUGCGCAACCAUCGCCUAUGCCCGCCGCCGCUGUCGGGAGGAGAGGAGAGGAGGGAGGAGUGAGGAGAUGAGAGACACCGUGCGGGGGAAGGGGAGUGAGGAGAAAAAGAGAUAGAGAGGAGAGGAAAGAAAUAGGAGAAGAUUUAAAGUGGGAAAGAGGGAAAGAGGGAAUGGGUAUUUUUAUGUGUGGCUCUCUUAAUAGGUCCGCACGCGAAAAUAUGUUCAUUUUCGCGUGUGGUCCAUUUAAGAGGACCACACGGAAAAAUCGAACCGUGUGGUCCUCAUAAAUGGACCGCAAGCGAAAAUGAGCCUAUCUUCCCAGACGCGACUAGUUAUGGUCCGUCUGCAAUAUAAAGUCUCUGUACACGAAAUCGUUUUUAUAGUGUUACUACCCCGUAAAAGUUCUUUAAAUUAAAACUACUGGACGGUGCCUAGUAGUAUUUUGGGUAAAAAAAAAGAAAAACAAAAAAAUCAAAAAAAAAAGUUCUUUAAAUUAGACUAUGUUCUACUUAGAGAGAAGGUAGAGCACUAGCUAAUACUCGGUAACGACCACAGUAACAACACAAAUAUUAAUUUAAGACUAACACAUCAAAACUGUGGAUCUUUGAGUUCUAGUGUGUUGAAACUUAAGAACAUGAUUGUCUUAUGCAAGAAAGUGAAACAGACCGCCUACACACAUACAACAGGUCGUCGGAUAAAAUACAUGUCAGAGUAAACGACAAGCAUAAGACAGUAUUUGUAAAUAUUCUGCAACACACUCCUACUAGAAUUACGCAAUGACCUUAUUGAAAAUAUACACGUAUUCUAAAGUUCUGUCACGCAUGGAGCGUAUUAAAAGAAAAACAUGCUUUGUUAUUCCAAAUUUCUAAGCCUUUUUGGGUGAAGAACAUGAGGACGGCGAUAUGCAUGGAAAUCACGACAGCUUUCUUUAUUUUCCUGUCUUGACAACGAAUUCUCAAUCAUUUGGCCAGACUACUUAUAGGUUCAUACUAAUUACUCCCUCCGUCAAAAAAAACUCAACCUACGAGAGGAUUUGAUCUCUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.89%
ME_num:
MEP:
28.25%
HE_num:
HEP:
65.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.58
Avg Expression:
15.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.45651990460414 | 0.0214985951014219 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.78553649373499 | 0.000123084609214917 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.24620184397859 | 0.0298270193362323 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.36579367930289 | 0.0439185898562429 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.70683118354783 | 0.00286842694727279 |
6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.2923202367062 | 0.00987783942494341 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.42949744271508 | 0.012639184966468 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.14515905220406 | 0.0311562385011921 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.86363000836687 | 0.004253503946734 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.39307363809142 | 3.49775395555717e-05 |