OSA-LNCN5764


Function Link


Basic Info

Chr:

Chr6

Start:

11718145

End:

11723119

Strand:

-

Ref_name:

OSA-LNCN5764

Sequence
(OSA-LNCN5764.1):

CUAAUGUCAAAAAUAAUUAUGUUACAUAACAUAUGUACAAGGUCCCAAGUUUAAAACAUGAAACGUUUUCGUAUAUUAAUAUAGUAAAUGUGUGCACUUUAUCAUCUUAUCGCGUGAUGUAUUUUCAUCGGUACGACUAAGUGAGCAAUACGCUUGAUUGUCAAGACCGUGUUAAGAAUACUAACAUCACAACAUAACUACAUGCAAGAAUAUUUUAAAAGCAUCAAGAGGCCCCACAUGUUAUAGAGGCCAAUACCAAUCAUGAUUCUUAUGUUCUUUUAUCAAACCUAUGCUUUAAACCAUAUGUUAGUUUUAAGAACCAUUUGAAUUACCAUAGUCCAUUUUAAAUAUAUAAAAAUGAGUUUAAUAUUGAAUAUAUUCAUACCUUUAAAACUACCCCUCAUCCUCUUGCAUCUACGCGUUUGCACCGCAUGUCACGCCACCUGCACGAGCCCAGCCUAGAUAGGGAGAGAAGCUCAACUUGAGCCUUUUUUAGGGCCUAGCUAUAGAGGCCAUUUCUCACAUGAGGUUCUAGGCCCCAAUGGUUGUGCAGGCAACCAAACAACCUCCUUAGGUAUCCGCACAUGCGAGCAAUCUUCCAACUAACCAAACACGCCCUAUGCCCUAUGCCUCCCAAGCCAAUUUAUAUUAUAUUGAAAGAUGAUUCAAUAUAAUUAUGCUAUUGUUUCCUUAUAUCUCUCUUGCAAUAUUUUCGUACCGGAAUAGAUCCAGUUGAUCGGUAUUCGGUCCUACUAGUUCUUCCUGCUAUGUACUUAUGUUUUUUUUAAUAAUUUGUCUCUUCCCAGUUACAACUAACACCAAUUAUUGUUAUACAUUGCAUUUUUGCACUAAAGGCAAAUACUUUACUGCAGUACGUACAAACCUCCGACUUCUUUUACGGUACAAUAUAUAUGCUGGUAGUAUAAUGUCAAUUUAGAAAUUUAUCACAAAAUUUUAAAAAUGGUACUUUAGUACUUUCGUGCGCUUAGUCCUUCCAUUGUAAUGGUUGGUGGCGGCGUACGUGAACUCAUGAUGGCUAGCAGCGCCUUGCCGUGGUGAAGGAUAACAAGAAUAAGGAAUGGGAUUGAGAGGAGAAAAUAUACAGAAUUGCCAUCACCAAAUACUAGCAUGGAAAGAUAAUUUUACCUGUACAUUUACAUCAGGAGACAAAUUAAUUAAUCCUAAUACCGAUUACACUACUACGAGAAAGAUUUUUGCGUGCGGUCAAAAUCAGUUUUCGCGUGCGAGUGGGUGGCCCGCACGCACCCAGGGGUAUGAAAAAUCACGAUUUUUGGCACCUGCACACGAAAGUCGGAUUUUCGCGUGCGGGUGCUUAUAUCGCCCACACGGAAAAACAAAAAUCUGAAAAAAUUCAAAAAAGUUGAAAGUCCUAGAAUCGGCAGCGCCAACGCCGCUCCCAGCCGCUGCCUCCUCCUCGUCGGCCGACGACGUCGCUCCCGCCCUCGUUGUCAUCGUCAGCCGAGGAUGCUGCUCCCACCCUCGUCGUCAUCAGCGGCUGCCUCCGCGACACCCACCACCCGAUCCGUGCUCCCGCCGGCCUCCAUGCCGGCCACCGCCCGAUCCGCGCUCCCCUCCGGCCGCACCGCCGCCAACGCCCCUCCCCUCCGCCGGAUCUAGGAGGGAAGGAAGGGGAGGGGAGGGGAGCUAGAUCCCGCGUGGGGGGAGGGCGGCUGCCCGCCGGAUCCGUGCGGGGGUUGGCCGCCGCCCGCUGGAUCCCGCGCCUCGGCCGCCGCCGCGUGGAGGAGGCCGCCGCGCGCCAUCGCCUACACCCACCGCCGCCGCGUUGCCACUGUCGUCGUGCGCAACCAUCGCCUAUGCCCGCCGCCGCUGUCGGGAGGAGAGGAGAGGAGGGAGGAGUGAGGAGAUGAGAGACACCGUGCGGGGGAAGGGGAGUGAGGAGAAAAAGAGAUAGAGAGGAGAGGAAAGAAAUAGGAGAAGAUUUAAAGUGGGAAAGAGGGAAAGAGGGAAUGGGUAUUUUUAUGUGUGGCUCUCUUAAUAGGUCCGCACGCGAAAAUAUGUUCAUUUUCGCGUGUGGUCCAUUUAAGAGGACCACACGGAAAAAUCGAACCGUGUGGUCCUCAUAAAUGGACCGCAAGCGAAAAUGAGCCUAUCUUCCCAGACGCGACUAGUUAUGGUCCGUCUGCAAUAUAAAGUCUCUGUACACGAAAUCGUUUUUAUAGUGUUACUACCCCGUAAAAGUUCUUUAAAUUAAAACUACUGGACGGUGCCUAGUAGUAUUUUGGGUAAAAAAAAAGAAAAACAAAAAAAUCAAAAAAAAAAGUUCUUUAAAUUAGACUAUGUUCUACUUAGAGAGAAGGUAGAGCACUAGCUAAUACUCGGUAACGACCACAGUAACAACACAAAUAUUAAUUUAAGACUAACACAUCAAAACUGUGGAUCUUUGAGUUCUAGUGUGUUGAAACUUAAGAACAUGAUUGUCUUAUGCAAGAAAGUGAAACAGACCGCCUACACACAUACAACAGGUCGUCGGAUAAAAUACAUGUCAGAGUAAACGACAAGCAUAAGACAGUAUUUGUAAAUAUUCUGCAACACACUCCUACUAGAAUUACGCAAUGACCUUAUUGAAAAUAUACACGUAUUCUAAAGUUCUGUCACGCAUGGAGCGUAUUAAAAGAAAAACAUGCUUUGUUAUUCCAAAUUUCUAAGCCUUUUUGGGUGAAGAACAUGAGGACGGCGAUAUGCAUGGAAAUCACGACAGCUUUCUUUAUUUUCCUGUCUUGACAACGAAUUCUCAAUCAUUUGGCCAGACUACUUAUAGGUUCAUACUAAUUACUCCCUCCGUCAAAAAAAACUCAACCUACGAGAGGAUUUGAUCUCUCC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

29

LEP:

5.89%

ME_num:

139

MEP:

28.25%

HE_num:

323

HEP:

65.65%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.58

Avg Expression:

15.02

Tip: OSA-LNCN5764 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-1.456519904604140.0214985951014219
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.785536493734990.000123084609214917
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-1.246201843978590.0298270193362323
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.365793679302890.0439185898562429
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.706831183547830.00286842694727279
6Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"6.29232023670620.00987783942494341
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.429497442715080.012639184966468
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.145159052204060.0311562385011921
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.863630008366870.004253503946734
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.393073638091423.49775395555717e-05