RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5763

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

12000803

End:

12013096

Strand:

+

Ref_name:

OSA-LNCN5763

Sequence
(OSA-LNCN5763.1):

AAUAAAAAAAAGGCUUAAAAACGCUCAGCGCAAAUGGCUUGCUUCUAGGUGUGUGAUCUUCCUGUUCGUCUUGUUGGUCUCUCUUGCAAUUGCUUCGCAGGGCGUCCAUGCAGCUAGGGAGCUUGUCGAGACCACCAAGAUGGAUCGUCGUAUGGCAGCGGCUUGCCGGCGUCGUACGCCCCCAGCCCACCUCGUCCAUGAUUUAUACUUGCGAACACGCCACAUAUAUAUUCUACAUGUAAUGGAUUAAUAAAUUGUUGGGAUUGAGCCAACAUGUUCGUCUUUCGUAUUUUGUUAAACGACAUAUAUUUUCCUGUAUUUUGUUAAACAUAUAUCUUUCGUUACUUUGGUACACUUAUAAAUCUUUAGUUUUAGUACUCGAGAUGCAUGCAUUUGAUUCUCCGCGACAGGAAGCACCAUUUAUCUUCCAUACUUGUAAUGGCCAUUUUAUGUUCUGGAAUUCGUUGGUAUAUAUAUACCUGUGCGUGGAAAAGUUUGCAAAUCUGAUUAACAAAAGGAUGGUUAUGACCCAAAUAUUGGAG

Sequence
(OSA-LNCN5763.2):

CGCAAAUGGCUUGCUUCUAGGUGUGUGAUCUUCCUGUUCGUCUUGUUGGUCUCUCUUGCAAUUGCUUCGCAGGGCGUCCAUGCAGCUAGGGAGCUUGUCGAGACCACCAAGGACUAUUGUGGAAAUCGGCCGACCGACGAAAGAUGGUUUCUCCACCAGUGGUACCUGCUCAAAUGGAUCGUCGUAUGGCAGCGGCUUGCCGGCGUCGUACGCCCCCAGCCCACCUCGUCCAUGAUUUAUACUUGCGAACACGCCACAUAUAUAUUCUACAUGUAAUGGAUUAAUAAAUUGUUGGGAUUGAGCCAACAUGUUCGUCUUUCGUAUUUUGUUAAACGACAUAUAUUUUCCUGUAUUUUGUUAAACAUAUAUCUUUCGUUACUUUGGUACACUUAUAAAUCUUUAGUUUUAGUACUCGAGAUGCAUGCAUUUGAUUCUCCGCGACAGGAAGCACCAUUUAUCUUCCAUACUUGUAAUGGCCAUUUUAUGUUCUGGAAUUCGUUGGUAUAUAUAUACCUGUGCGUGGAAAAGUUUGCAAAUCUGAUUAACAAAAGGAUGGUUAUGACCCAAAUAUUGGAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

413

LEP:

83.94%

ME_num:

70

MEP:

14.23%

HE_num:

8

HEP:

1.63%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.95

Avg Expression:

1.68

Tip: OSA-LNCN5763 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated5.980775841243585.30327541007379e-07
2Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated5.852106027436735.14311820920223e-09