RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5752

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

11094223

End:

11097404

Strand:

-

Ref_name:

OSA-LNCN5752

Sequence
(OSA-LNCN5752.1):

CACAGAACAUUGCUCAACUGGCAGAGGUUUGGCCGCACGAAUCAGACAUUACCUAUACCUAUUUCAAGUUGGAAUAAAAUCCUUAUUUGUUGUGUUUGGUUCAGGAGGUGAGUUGGGUUGCACUCAUCCAUGUUUUUGGAAUGGGAUGCCAAACGAAUAGAUGGAAUGAUCCCGUCCUAAAAAGAAGGAUGAGUCCAACCCAUGACCCAUCCCACCUCAUCCCCAAACCAAACACAUCCCAAGGGAUGGCCUAUCAAUGAGAAAAAUGGGUUGGAUUGGUCUGCCCUUUUUAAGGGACAAGGGCAACCCGGAUCUCAAGGGAAUAUUCUCUUUUAGGGAUCAUCCCAUCCCACCUGUCCUCAAACCAAACACCCUGAAAAAUGGGUUCAACCCAACCUGACCCAUCCCAUCACUUCAACCAAUUAUUUGCCCCUAACUGUCACAUGACAUGGAUGGAUCCAAUGAAACAUCAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

100

LEP:

20.33%

ME_num:

267

MEP:

54.27%

HE_num:

124

HEP:

25.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.65

Avg Expression:

10.11

Tip: OSA-LNCN5752 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-1.111796621450310.0220351526391343
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.773753375229610.00689014603479071
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-1.239827679535480.0320303584835922
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.867242109657460.00278156183800928
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.005680697883710.0273114711340107
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.80300063240560.000495137244235689
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.090875809695280.0335954220358774
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.397622068796220.000805486559700783