Chr:
Chr6
Start:
10956227
End:
10961824
Strand:
+
Ref_name:
OSA-LNCN5747
Sequence
(OSA-LNCN5747.1):
CCCGUCCGCUCACCGGGAAGAAGAGAGAGAGAGGAGAGGGAAGAAGAGAGGAGUGAGGAUGAGGAAGAAUAGAGAAGGGAGAGGGAAGAAAGGAGUGAGGCUGACAUGUGAGGCUCCCGUGGGCCCCACCAUUUUUAAAUUAUUAUUUUUUGGUGUAACUGAUAUUUGGCCCCACGGUUUUUAUUAUUUUUUGGAUAGAAUUGUCACAAGCGCCACGUCAAAUGACACGUGGGAUGAAGAACUAGUCAAACCAGCCACGUAAGCACCACGUCAGCAAAAACCACCUUUCAAACCGCCGAGGGACCUCGUUCAAAAGUUUGGCCCAAGUAUGGUACGUAAAUAAAUUCGGCCCAAA
Sequence
(OSA-LNCN5747.2):
CACGCAGGCGCAACCCGCCGCACAACGCCGGCGAGCGCGCGAGGCGGACUCACUCGGUCACUCCUCGCUUCGAUCUGUGGAGGCGGGUGGGUGGUGGCCGGGUUUGGUGCGGAGCAGGCCGCGGCGGUGGCUGGCGGAGGCAGAGCGCGCGCCCAGUUUGCUCGGCAGGACUGCGCUGCUGAUGCGGGCGCUGCUCAGUUUGUGCCAGAACGCUGGAGGACAGUUCAUGUUUGGUGAAAUGCUUUCUGUGGAUCUGCAUACCUGCUGUCUGAUGAAAUAUCUUGAUGGAUUAACCAUCUUGGGAGUGACAGGCCACUUAUGCUAUGCCUUCAUAUCACCUUUUCGAUAAUGGUGACCAUGGUAGAUGGAGGUAAGUACUUCAGGUGCGUAUCCAGCUUGCCUUCUGUAUUUAUUUCAAUUUGCCUGUCUUGUAUUUACUUGUAAAUUUUGAUUGUAUAUGUUAACGUAUCACAAGAAUCCAAGUUCACCAAAGCAUUUGGUUGAUUUUGUCACAUGCUAGCUGUCACCGUAGUGGCACAGACUGGAAGACUUACUAUUAUACUAUUAUACAGUACUGCAGGUUGGGUCUUGGUCUAUUGGAUGUAGUGGCCAUGAGCUUUAUAUACACCAUAUGUUAUCUAAGCUCUAGAAUUAGUAAGAAAAGUAAAGUGGUGCAAGCAUCUUUUAGUACUUUAUAAUGUAUUUGUCCCAGUAUAUAGGAUUACUUAACAUGAUUUGGAAAAAUCUUCUGGGGCAAAUACUGGUGUCUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.99%
ME_num:
MEP:
11.38%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
1.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.27712318551416 | 0.000753081077523345 |