OSA-LNCN5740


Function Link


Basic Info

Chr:

Chr6

Start:

10446327

End:

10447187

Strand:

-

Ref_name:

OSA-LNCN5740

Sequence
(OSA-LNCN5740.1):

GCUCGUCCUUGAUGAACCUGUAGACAAAAUGUUCAACGGAAUUCAAGACAUUGUUUUCACAGGCGUGGCCAACAUCCCACGUGGACUGCGUUGCUUGUAUGUAUACAUGCAUAUAUAGCAUUAUAAAUCACAAAUAUGAACAAAUUGGAAGCUCAAACUAGGAACGUGAAGAUUAAUUUGCAUUAAAUCUUUGAUUCCAUGGUCAAAAGCAAAAUUGCACAGCACUGAACGUAAUAGUUCCAUGUCAAAUUGUACAUGCAUUUGACUUAAGCAUGCCAUGCUACAUUGUUUACUCUCGAAGGCAACCAUGUUUCUGUCUAAAUUAGAUUAUCACCAGGUCCAUAAUAGCUGCGUCGUUUGUAUUCCUUCAUUGAACAUGGUUACCAUGAGGAAACUGUGUCCACUUGUGUUUGGGCAUAUAGAGGGACUUCCAGUACAUCCUACUUUCACUUUCCUCUACAUGUAUCUCCCGAAGAUGUUGCAAAUAAUAUACUUAU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

281

LEP:

57.11%

ME_num:

207

MEP:

42.07%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.81

Avg Expression:

1.90

Tip: OSA-LNCN5740 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.950348203945080.0488610591219485
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.815954487663290.00642999566468336
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.778918965666380.00276575575151086
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.4808047495640.00537380876600489