Chr:
Chr6
Start:
9248222
End:
9253744
Strand:
-
Ref_name:
OSA-LNCN5702
Sequence
(OSA-LNCN5702.1):
UAGUUGUAGAGCAAAAGGACAUUUAUAUUCUUGGUGGUUAUUGCAUUUUUAUUUUUGUCCCUACCGUGUGAUUUCAGUUUGUAUGAUUGUUAUAAAUAAUUCAAAUAUGAGCAUCCCUUGUGAUGUUUUUCAACAAAAAAAUAACAAAUACUAGCCAAGUACAAAAUUUGACCAAAAUUUGAACAAAAUUUCGAUAGGUCCGGAAAGUUGCUACUGAAGAAUUUCAUGACGAAGAAGCUCAUCAGUUACGAAAAACAGAGUUCAUCAGUUCAUCAGUUAUAACUUGAGCAUCAGCAUUUAACAAUCAUGAGAAAUACAAAGUGAGUCAUGGUGCAGAUGGAGGACAUAAAUGUUGCAACCAAGUGGACACAAGCACGCGUUGUCGUCGCCAUCGAUGUCGAGCAGGAUGGGGUCGUCGCCGGCUGCGUAGUACGAGGAGGCGCGGUGUGGGGAAGUGGCCGUACGGACCUCUCGAUGGCGGCGUACUCGCGGCAGGGGAGAGGGCAGAGGUCGGGGAGAGCUUGAACUCCUGCGUGGAAGCGGAGGCGGACGACGACGACGCCUCGGCGAGUCAGCGUGGAAGCCAGCGGCCACGGGAGCAACAACAGUAGCCGCUGCCAGGGCCAGUGAGGAGCCUGCCCGCCCUCGCAGCCGCCGCCGCCGCCGCGCGCUCGCGCUCGCCCUCGCCCUCGCUGCGGCCGCCGCCGUGCACGCCCUUGCCGCCGCGUCGAAGCUCCGCGCGUGGCCGCCUCACGCCCUCGUAGCAGCCGCCCGCGCGCAAGCCCUCGCCGCCGCCCGCCCUCGCCCUCGCCGCGGCUGCCGCCGCUACCCGCCGCCGCCGCGUCGAAGCCCCGCACGCGGCCGCCUCACGCCCUCACCGCGGCCGCCGCGCGCACGUCCUCGCCCUCGCCGCGGCCGCCGCUGCCACCAGCCCGCCCUCGCCACGGCCGCUGCCGCCGCGCACGCCCUCGCCACCGCCCGCCCUCGAGUCCCCGAUUCACGCACGCACGAGUUGGGGCCUGGGAGGACUCAGUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.02%
ME_num:
MEP:
25.0%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.95
Avg Expression:
64.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.7985200584869 | 0.0497143476065491 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.41783370731053 | 0.000473995319434603 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.36141834632092 | 5.38929020649394e-05 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.55328222969503 | 0.0161034311684541 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -2.03002192127344 | 0.0134334552927644 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.85958711469564 | 4.48039922846115e-16 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.85968203184411 | 4.37594300666632e-16 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.85983030939229 | 4.6249093565978e-16 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.08152417136543 | 2.86015416082194e-12 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.63907830867432 | 0.000801226827198563 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.43101628268307 | 8.77509708185169e-05 |