Chr:
Chr6
Start:
8695237
End:
8697306
Strand:
-
Ref_name:
OSA-LNCN5690
Sequence
(OSA-LNCN5690.1):
AGAAGAGGCAGCCAAACAGCCGACUCUUUCUUUUGAGAACUAUUUGAAAGGGACAGAAAGAUUGGAGACAAUUGGACAAAAUAGGUCACUAGCUCUGUAUAAUUUGGCAUUGGAAUAGUCUUCAGUCUACAAAAGAAUUCAUAACAUGCUUGUAAUCUCCAAUAUGAAAUUUACCCCAUCUUUUUAAUGGGAUAACAAAAGGAUAGAAAUAUUACCGUUGCAUCAACUAUAUUCUUCAAUGACAGGUCUCUACCGCCAUCAAUUUCUGCUUUUAAAAGGAUAGAUUGUGGUACCUUUUCUUUUGGGAGAAAGAAAGAUUACAGAAGGUAAUCAAAAAACUUGCCCUCAUCUUCCUCCCUUCUUUUAUUCUUCCCUCGUUCAUUACCUGAGCUCCGUCCACCAACGAGCUCCAACUGUUGGCAUGCAUCGACCGCAAAUGCUAAUUCGCGCAGACGCGACAGAUGCUUAUCUCGCGCGCACGCGGCAAACCAAUUGCACAUGCAUGCAUGCACCUCGGUCUCCACCCGUGCAGCUGCAUCGACUAUAUCUGCCAGCUUGAGCUCUGCCUCCCGAAUGAGCUCACCUAGACCCCUAACCAAGAUCCACUACCCGUUCCCCACCGCCACUGAAUUCUUCCAUGACCAGUCUCAACCGUGAGGGCACUGGAGCUCAGGCACAGGGGCCGGCAGUGGAGCUCAUGCACAGGAAUAGCAGCCGGAGUUGAUGCAUGACAGUCGGAGCUCGGUAUGGACGGAGCUUGGAGAUGAAUCAGGGAAGAAGAUGAUUUAGGAGAAAGACAAGGGUAAAUUUGGUAUUUCAUAUGUUAGGGUGGCAAAAGAGAAGGUUGCUGGCACUGAACUAUGGGAUAAAAUUACAAAGCCAACCAACUUCAGAGCAAAUCUACGCAUGCACCCAUUUCCCAACCGAUUUACUGAUCCGAGGCUUAUGGGAUGGAUACAAUAGAGCAAAAUGAACACUCAUCACUCACUACAGGGUAAUAUCACUGGAAUCGUAUCCUCUGACAUUAGAUUACAGGGUAAUGUCACGCUGUGACAUUCCUUCC
Sequence
(OSA-LNCN5690.2):
CUGAAGUUAUAUACUCCUGAGUAAGUUGCAAGUAAAAAAGUAACAAAAAGGCUAUGCAUUUAUCUCUGUUCCUAGUAAAAAUUCCAUCAUCUAUCGGAAGGGAUGUGUCGGCGUCAGUGAUGUGGACACGAGUCACAUAGGACCAAGAUCUGGGCGUGCAAUUGGCAAAAAUUAGCAUGCUUUGGAUCACGAUUCAUCAAACAAAUGGGGGUGUACCCAUCUUCUCCAACUGGACCGCAGGGAUGGGCUUGAUGUUGAUGCCCUGGCGAAGCACACACUCGCCUCCAAAUCUCACUCCGUUGUCCAGCUUUCCAGGAGCGGUUCCUGCCUGGAUUUCACGAAGAAUAUGCCGUUUCUGGUGACAGCUAAUGCGUCUGUACAGAGCACUGCAAAUUUUGUGAAAGCUAGUUCAAUUUUUCAGAUAAAAUAAAUUUGCAGGAGAAAUAGGGUAUUGAAUGUUUUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.59%
ME_num:
MEP:
21.54%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
4.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.33656870428652 | 0.000198810519297159 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.94504657558878 | 0.0320756241672077 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -5.51579231879134 | 0.00536472379602738 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -9.656930676319 | 1.41409258194225e-12 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.01879238747632 | 0.00488061968006059 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.0187065399037 | 0.00493262915658513 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.01860702286946 | 0.00489457243875148 |