Chr:
Chr6
Start:
7729899
End:
7730736
Strand:
.
Ref_name:
OSA-LNCN5663
Sequence
(OSA-LNCN5663.1):
ACCUGAUGCAUUUUAAAGUCCCAUCUUCCAUAAACCAUAACAAUAAACUACUGUUUGCUAACAUCUAUGAUCGAUAAGACAAUUGUAUAGUACAUAGCUUCCAUUUAUUUAAACCUCUGUCGUCAUUCCUUACAAUUUGCCACCCCCAUUCAUGGGGAAAUUAAAUCAACAUGGAUAUAUAUUAAUAAACUAUAAACCAAUAUGAAUUUAAUCCAACUACUAAUAAUCAAGUGGUUAAUUGAGUACAUAAACCACCAUAUCCUUAUGUACUAGCCAUCUAUGCGAAUGACAGGUGGGCCCCACUUCAAUUAACUCCCCGAUGGAGGCGGGCAGCCGCCGUUGGAGCUGUUCGUCCCGCACGAUGCCCCUGACCCCAACUGCUGCAGGUAUACUCGCCGGAGAAGCUGCAGGAUCGACUCGCCGGAGACGACGCCGCCGCUGCCGCCGCCCAGCGGCCGAGCCGAGCUCGACGCGACGAGGAGCGCCAUGAUCGCCGCCAAGAUCACCAACACGACAAUCCUUGGCUGCCUCAUCAUCACCAUGUGUCCAGCUCAGAAUUCAGAAGAGAGUGAACAGUGAGCAGAAAUUAGCUAAGCUUCUGAGUUCUGAUGCUGCUUCUGAAUGCAGAGAGCUCAACUUUGGCAGUGAGAUCGAUCGAUCGAGUUGAUGUGAUUUCAAGUGCUAUAGACACGGUUAUAUAUAUAGGGAAUGGGAUUUGGGUUGGGUUUAUGGCUAAUUAAUUUAAGCUUAGGUAGCUGCUGCUGAUGCUUCUUGAAUGCGAGCUUGCAUAGUGAUCGAUCGAUCGUCAUGCAUAUGUGUUACGUGUGGACCGGGGCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.74%
ME_num:
MEP:
35.57%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.93
Avg Expression:
12.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.74590325121011 | 1.05362580945341e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.19927494871677 | 0.00101887777221367 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.8187066373775 | 0.00456816803438435 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.64798745668249 | 4.3247612195474e-18 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.93624231494986 | 7.36122270173546e-05 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.66241785909465 | 0.0281551498207152 |
| 7 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -3.61744124083384 | 0.00466752836747373 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | -1.5814129881087 | 0.0300646753242382 |
| 9 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.26153874773218 | 0.0283171572161552 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.0712396833556 | 0.000642689890944944 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.47096298065446 | 0.000667167298761829 |
| 12 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 6.13363213212525 | 1.18006247357652e-18 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.06814743380225 | 0.000596742094233755 |